Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1505 ATGTTAGGGGAAGCGGGTAAGAAGGACAAAGCCCCCCCCGGTGGTGTTGCATGGAAAACTTATTCTCGTTCTGTTTCATGGACTGATAGGTCTCCCAATAGCCGCAAGCCACCGACAAACAGCAAAACAAGACCACTTTTGCCACCCCTTCAGCCTCTCTCAATCAACAAACGCAACGTGGAGGAATGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTCCTCAGACTCCAAGAGGCTCCTCAACCTCCTCAAGTCAACAACAACCCACCAAGGATTTTCTCTTCAAGAGGGACAAATTGGCCTTCTTTGACAAAGAGTGTTCCAGAATTGCCGAGCACATATACTTGGGGAGTGACACGGTAGCCAAGAACCACGAACTCCTCAGGCAGAATGGAATCACTCACGTTCTCAACTGTGTTGGCTTTGTTTGTCCTGAGTATTTCAAAGGTGATTTTGTGTACAAGACACTTTGGTTGCAGGACAGCCCCACTGAGGACATCACAAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAGCAAGGTGGGCGTGTCCTTGTCCATTGTTGTCAAGGGGTTTCTCGATCAACGGCTTTGGTGATTGCTTACCTCATGTGGAGGGAAGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGCTGTCACAAACCCGAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAAAGGGTTCATGCTATGCCTGCAAGTCCAAATTCTGTTCTCAAGATGTATCGTATGGCTCCTCACTCCCCCTATGACCCTCTTCATCTTGTCCCCAAGATGGTTAACCAGCCAGGTTCACAAGCTCTTGATTCTCGTGGGGCATTCATTGTCCATGTTCCTTCTGCTATCTATGTTTGGAATGGGAAACATTGTGACTCTGTGATGTCATGCAATGCAAGGAGTGCAGCCTTTCAGGTGATCCGTTATGAGGGGGCAAAAGGTCCTATTTTGACAATCCACGAAGGTGAAGAACCACCCGGGTTTTGGATTGCTCTTTCTATTGAGCAACGAATATCAGGTGATTCTGAAAAAGAAGTGGTGATCATGGAGGAGCCCTCTGAAGGCATGGAGAGTGCTGTTGAACCGGTTGATTCTGGGATGACTACTGGTCCAAGAAAAATTGATGCATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCCTTGTCTGATCCAGGATCAGAAACTTGTCTTCCTGCTAGAGAACAAGGTTGGGCAAGACTGAGGAGGAAGTTTGCTAGTGGATTGCTCACATCCCCCAAATTCATCTGTGATGCTGATTCAACCCCATGCAATGATCATCAACCTAGTGTATCTGAGGAAGCTGCATATGAGCCTTTGTCACCATCATCAATTCCTCCGTGTGGTTCACCGGATTCCTTTGAATGCTATCCAAATAGGGAAAAAGGTAGTCCTGAAGCCATGGACTTCTCTGTTCATGGTGTTGCTTCATCATTGCCACTGTCTCCTACCGGCACATCAAATCCTTTTCCTTGCTTCATAAGCTGCATTCCAAAATTCAATTCCAAGTCACCAACACTCTCACCTTCAAGTTCTGATTACGCCAGTTCATTTACTTTTTCGCCTTCCTCTACCAACTGGTCCGACTTGTCCTTGGTGTCTTCTCGGCAGCCATCACCATCTGGCCTTGAATCGGCTGAACCCTTTTATGTTAAAGACGCGTCTTTCTCAGAAAATTCCACTTTACTTCACAAAGATGTCTCTTCACCCTTGGAAGAATTTTCAGCTAATCACACATTTGGAGGGGCGAACTCCAATTTGCAGTTGAAAGGTTCTTTCCTCTCCATCGCCGAGCGCAGAGGGAATCATCCACCGCCTCTGATGTTGCTACCCTCAGCCAGTGAATCCTCTCATGTCCCCAAGAACAACGTGGAGGACTGCAACTAA 1995 0.4672 MLGEAGKKDKAPPGGVAWKTYSRSVSWTDRSPNSRKPPTNSKTRPLLPPLQPLSINKRNVEEWPSAGSDDLGVWPLPQTPRGSSTSSSQQQPTKDFLFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKGDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSVLKMYRMAPHSPYDPLHLVPKMVNQPGSQALDSRGAFIVHVPSAIYVWNGKHCDSVMSCNARSAAFQVIRYEGAKGPILTIHEGEEPPGFWIALSIEQRISGDSEKEVVIMEEPSEGMESAVEPVDSGMTTGPRKIDAYDLDFEIFHKALAGGVVPPFSLSDPGSETCLPAREQGWARLRRKFASGLLTSPKFICDADSTPCNDHQPSVSEEAAYEPLSPSSIPPCGSPDSFECYPNREKGSPEAMDFSVHGVASSLPLSPTGTSNPFPCFISCIPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSLVSSRQPSPSGLESAEPFYVKDASFSENSTLLHKDVSSPLEEFSANHTFGGANSNLQLKGSFLSIAERRGNHPPPLMLLPSASESSHVPKNNVEDCN* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1505 664 MobiDBLite consensus disorder prediction 559 580 - -
Gso13g1505 664 SUPERFAMILY Actin depolymerizing proteins 256 352 - -
Gso13g1505 664 MobiDBLite consensus disorder prediction 634 664 - -
Gso13g1505 664 Pfam Dual specificity phosphatase, catalytic domain 117 247 IPR000340 GO:0008138|GO:0016311
Gso13g1505 664 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 229 IPR000387 GO:0016311|GO:0016791
Gso13g1505 664 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 251 IPR029021 -
Gso13g1505 664 MobiDBLite consensus disorder prediction 1 92 - -
Gso13g1505 664 ProSitePatterns Tyrosine specific protein phosphatases active site. 193 203 IPR016130 GO:0016311|GO:0016791
Gso13g1505 664 Gene3D Protein tyrosine phosphatase superfamily 81 251 IPR029021 -
Gso13g1505 664 Gene3D Severin 272 359 IPR029006 -
Gso13g1505 664 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 251 IPR020422 GO:0006470|GO:0008138
Gso13g1505 664 SMART dsp_5 109 248 IPR020422 GO:0006470|GO:0008138
Gso13g1505 664 PANTHER MKPA PROTEIN 19 642 - -
Gso13g1505 664 MobiDBLite consensus disorder prediction 21 41 - -
Gso13g1505 664 CDD DSP 110 244 - -
Gso13g1505 664 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 19 642 - -
Gso13g1505 664 MobiDBLite consensus disorder prediction 559 578 - -
Gso13g1505 664 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1505 Gso-Chr13 30517902 30521707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1505 4 145 Protein tyrosine phosphatase (PTP) family AT3G55270 45.055 2.88e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1505 - - gmx:100775448 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0115 18 964772 967923 Gso13g1505 13 30517902 30521707 GST
Gso5g1477 5 38210660 38213360 Gso13g1505 13 30517902 30521707 PCT
Gso8g1105 8 10148441 10151229 Gso13g1505 13 30517902 30521707 PCT