Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1500 ATGGGCCTCTCAAATTTCCCAATTAGTGCATCTGAAGGGGTGCTACCTGTGCTTGTGATAAACACGGTTTTCTCAGTGGCTTTGTTGAAGAGCATGTTTAGATCCATGCTCCAAGTAGTGTTTGGTGGCAGTGCTGCTAGTAGTTCTTCAAACATTGAACATGATGATGAAATTAGTTCATCATCATCATCACGGGAAAGGAGGGTGTCAATAACTCAGTACAAGTCATTGTGCCACAGTCATGACATAGGAGGAGGAACAAGTGTGGCTATGGTGGAGTGCTGCGTTTGTTTGTGTCGTTTTGAAGCCAATCAAGAGGTTAGTGAGTTGCCTTGCAAGCATTACTTCCACAGAGGTTGCTTAGACAAATGGTTTGAGTTTGATAACAAACACAGCACTTGCCCCTTGTGTCGTTCCATCGACTAG 426 0.4413 MGLSNFPISASEGVLPVLVINTVFSVALLKSMFRSMLQVVFGGSAASSSSNIEHDDEISSSSSSRERRVSITQYKSLCHSHDIGGGTSVAMVECCVCLCRFEANQEVSELPCKHYFHRGCLDKWFEFDNKHSTCPLCRSID* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1500 141 MobiDBLite consensus disorder prediction 46 67 - -
Gso13g1500 141 SMART ringv_2 93 138 IPR011016 GO:0008270
Gso13g1500 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 141 IPR013083 -
Gso13g1500 141 ProSiteProfiles Zinc finger RING-type profile. 94 138 IPR001841 -
Gso13g1500 141 PANTHER F21J9.24-RELATED 1 140 - -
Gso13g1500 141 CDD RING-H2_PA-TM-RING 93 138 - -
Gso13g1500 141 SMART ring_2 94 137 IPR001841 -
Gso13g1500 141 Pfam Ring finger domain 93 138 IPR001841 -
Gso13g1500 141 SUPERFAMILY RING/U-box 93 139 - -
Gso13g1500 141 PANTHER - 1 140 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1500 Gso-Chr13 30479046 30479896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1500 1 139 C3H Transcription Factor Family AT2G04240 32.903 1.61e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1500 K16285 - gmx:100527069 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0120 18 1006022 1006781 Gso13g1500 13 30479046 30479896 GST