Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1494 ATGGAGGTGACCCAATATACGTTCCTGGTGGTCCTAGTGTGGAGTTCATTATGTACAAATGCACAGTGGAATAACCCAATAAACTACTCTCCCTTCGACGAGATAAACAAAGGTGAAAACTCGAAGGTGACATGGAGTGTGTCGCTGTCATGTGTCTTCATTAGCATCCTCGTGTTTGTGTTGTTTAAGCTACGCGCGTGTTGTTGTTCTTCTTCCGGACGCCGTAACACTACAAAGCTCGTGGCAGCAGCCACAGAAACGATTGAAAAGTGCCCTGTTTTTGAATACTCGACGGCGAAGGAGCTTAAAGTGGGGAATGGGACAGAGGAGTGCGCGGTGTGCTTGGTCGAGTTCGAAGACTCTGACACCATTAAGATGCTCCCAAAATGCCAACACGTTTTCCACCAGCATTGCATCGATACATGGTTACCCTCTCGCATGACCTGTCCCATTTGTCGCCAGAAACTCACGTCTGAGGATAATACCGTAATCGACGTTGTTGATGTCGTCGTCCCAACGGAACAACAAGAACATGATGATACAGAGTCTACAGAGTCGGAGGTGGCAGTAACAGCAGCAGAAGAACAACCTCAACCTGATGAAACTGCAGAACATGAAACCGACACTGATCACAGTACTGTTGTGGAACAGGTGGTTGAATTTGAGGTTGTTGCCTGA 678 0.4749 MEVTQYTFLVVLVWSSLCTNAQWNNPINYSPFDEINKGENSKVTWSVSLSCVFISILVFVLFKLRACCCSSSGRRNTTKLVAAATETIEKCPVFEYSTAKELKVGNGTEECAVCLVEFEDSDTIKMLPKCQHVFHQHCIDTWLPSRMTCPICRQKLTSEDNTVIDVVDVVVPTEQQEHDDTESTESEVAVTAAEEQPQPDETAEHETDTDHSTVVEQVVEFEVVA* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1494 225 PANTHER RING FINGER DOMAIN-CONTAINING 9 203 - -
Gso13g1494 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 159 IPR013083 -
Gso13g1494 225 MobiDBLite consensus disorder prediction 174 212 - -
Gso13g1494 225 SMART ring_2 111 152 IPR001841 -
Gso13g1494 225 MobiDBLite consensus disorder prediction 198 212 - -
Gso13g1494 225 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Gso13g1494 225 SUPERFAMILY RING/U-box 110 159 - -
Gso13g1494 225 CDD RING-H2_EL5_like 110 153 - -
Gso13g1494 225 Pfam Ring finger domain 110 153 IPR001841 -
Gso13g1494 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 9 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1494 Gso-Chr13 30444336 30445013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1494 3 159 Rapid Response to Elicitors AT3G05200 33.735 2.00e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1494 K10664 - gmx:100804862 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0125 18 1047981 1048616 Gso13g1494 13 30444336 30445013 GST