Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1492 ATGATGATTTTCCATCCAAGAAAACTATTTCACCCGTACCTTGGCTCAAGTGATTCTACCATGGGGATGGGGAGGAGAACAAATTATAGTTCAATACCTTCGCCTCTTCACTCACCAATCCCACTTTCATCAATTCCGTGGGTTCCTTCCCTCATTCATGGAGATCACATGCATCTAAACCTTGCACCTATCGTTATAATTGTCTTAGCTGGCACAACTTGCATAATTATGTTTCTCATCACCTTGTTCAAAATCCTAAGGTACTATTATCCAAATAGATACAACGTTAGCAGAAGCAACCCACCAATATTATTTGACATTCGTGGAGATTTTCCCTTTTCTGATGATGAGGAACGTGAACAAGCCATTAGGCATCCCATATGGTTCATCCTCACAGAGGGTCTCCAACAGTCAATCATAGACTCCATCACAGTATGCAAATACAGAAAAGAGGAAGGGTTAACTAAAGAATCTGAGTGTCTTGTTTGCCTTGGTGAGTTTCAACAAGAAGAGAGTCTAAGAGTTTTGCCAAAGTGTAACCATGCTTTTCACGTCCCTTGTGTTGATACTTGGTTGAGATCTCATAAAACCTGTCCACTGTGTCGTGCCCCTATTGTTCTTGATGTTGCCAGTGTTGGTGGTGGCACGGAGTCTGATTCAAGTGTTTCTGATATGAATGAATGCATAGAAGAAAGTAATTATAGTGGTGGAGAAGAAGAAGATTCTAGTGAAGAGGGGAGGGATGATGGAATTCAAGTTTTGAATGAATCTGGCAAGGTGAGTGGCCATTCTTCAATTCTAATTGGTTCTGCTTCTGATGATGTTACTGCACAAGAATTTGATGATGAAATTGAACTCAAAATGAAGAGGTCTGTCTCGGTGGATTCATCTTTTCCTTCAATGGTACTTAGGGATGTGTTGGATTTAAATTTGGATACAGAAAGCTTGGTGATTGAAAAGGTTTCAATTTCAAGTAACAAAGATGTTATTGCACTGCAAGAGAGGAATTTCTCATTGAGGTTCTCTTCACATGACACAAAATTCTTATTTTCCAGACGTAGCAGGAGCCAGAGTTTAACTCTTCCATTGTGA 1092 0.3993 MMIFHPRKLFHPYLGSSDSTMGMGRRTNYSSIPSPLHSPIPLSSIPWVPSLIHGDHMHLNLAPIVIIVLAGTTCIIMFLITLFKILRYYYPNRYNVSRSNPPILFDIRGDFPFSDDEEREQAIRHPIWFILTEGLQQSIIDSITVCKYRKEEGLTKESECLVCLGEFQQEESLRVLPKCNHAFHVPCVDTWLRSHKTCPLCRAPIVLDVASVGGGTESDSSVSDMNECIEESNYSGGEEEDSSEEGRDDGIQVLNESGKVSGHSSILIGSASDDVTAQEFDDEIELKMKRSVSVDSSFPSMVLRDVLDLNLDTESLVIEKVSISSNKDVIALQERNFSLRFSSHDTKFLFSRRSRSQSLTLPL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1492 363 PANTHER RING-H2 FINGER PROTEIN ATL54 34 341 - -
Gso13g1492 363 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 34 341 IPR044675 -
Gso13g1492 363 SMART ring_2 160 201 IPR001841 -
Gso13g1492 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 208 IPR013083 -
Gso13g1492 363 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Gso13g1492 363 CDD mRING-H2-C3H2C2D_ZSWM2 159 202 - -
Gso13g1492 363 Pfam Ring finger domain 159 202 IPR001841 -
Gso13g1492 363 SUPERFAMILY RING/U-box 143 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1492 Gso-Chr13 30423901 30432307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1492 61 207 C3H Transcription Factor Family AT1G72220 42.857 9.07e-39 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1492 - - gmx:106794135 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0127 18 1066425 1067528 Gso13g1492 13 30423901 30432307 GST
Gso5g1489 5 38305345 38307062 Gso13g1492 13 30423901 30432307 PCT