Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1490 ATGAAGAAAGCTACTAATCCCAACCCCTTCTCCACCCCCCGCCGCCACGATTTCCACCGTCCGCCACCACCCACCCACGGCTGCGGTTGGACTCCCCGCCCAGTCCACCACCGTCCCTACCACCAATGGAGGCCCCGATTCCAGCCCCACGCCGCCCGCATCGACCGCCCTCCGGAGCCTTATTTCAGGGTGGAGCTCCGCCTCGGCCGCTGCCCCCTCCACCGCGACGACGTCGAGGCCCTGATCGACGAATGCCGCTCCAGCCACGACAGCTTCACTTTCTACCCAACCGACGACGTCGCCGCCGTTCTCAACTACCGGAGCTGGGAGCAGGCGCGCGATGCCGTCGTCTGGTTCTGGGAGGCGCGGCTCGCGGAGAAGCACGATTTCACGCCGGCGTTGGATTCCAACGTTGTCGTCGTCAAGGACGATGTGGATTGTCGCCTTCGACCGGTTTTCGCGAGGCACGTGAAAGGGTTGATGATGATGGAAGAAGGTAAGGAGGTGAAGTTTTGGATGGATGAGTGTGAACGGTTGGCGAAAGAAATTTCTCGGCTTTCGAGTTCGCTGAGTAAGCCCTTGCGAATTGGCACGCAAAACGAGCTTATGAAGAAGAAGAAAGGGCTCGTTGATGAGAAGAATCTGGTTGAAAGGAGGTTGAAGGAGTTTGAGTCTGCGATGCAGTGTTTGTTGAAGTATTTGGAGGATGGCGGTGATGACGTGGAGGGTGTTAAGGTGTTTAGGTTTGATGGAGGTTTTGATTGGAAGCGGATTCACTGTCTTATCAAAAGGGAGTGTCGGAGGCTTGAGGATGGGTTGCCTATTTATGCTTACCGGAGGGATATTCTTCAGGAAATACATTATCAGCAGATAATGGTATTAATTGGAGCGACTGGTTCAGGGAAGAGTACGCAGCTGGTACAGTTTCTTGCTGATTCAGGCGTTGGTTCTGACGAATCCATTGTATGCACCCAACCTCGCAAGATTGCTGCCAAAGCAGTGGCTCAAAGGGTCCAGCAAGAAAGCAGTGGATGTTATGAAGGCCAATCAATCAAATATTGTTCTACATTTTTATCCTCGCGTGAGTTTGATTCCAGGATAACATTCATGACTGATCATTCTTTATTGCAGCACTACATGAGTGATAATAATTTGTCTGGGGTCTCGTGCATCATAATTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTTCTGTTGACTTTGTTGAAGAGTTTACTTTGTAGGAGGGTTGAAATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTACTTTTTTGGTTGTGGAATTTTTCATGTGCTTGGGAGAAGCTTTCCGGTGGATATCAAATATGTTCCTTCTGACTGTGGTGGAGATTCTGGTTCTGCTGTTGTTGCATCATATGTTTCTGATGTTGTCAGAATGGCAACTGAGATTCACAAAACTGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCTCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTCAAGCTGCCTCTGCAGTAGCTTTGCCCTTGCATGGAAAACTTTCATCTGACGAGCAGTTCCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAGGTATGTGATAGATTCTGGGCTGGTTAAAGACAGCAGATTTGATCCTAGCAGTGGGATGAGTGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGTGTGTGCTATAGAATGTACTTGGAAGCCGATTATCAGTCTATGGACCTAAATACAGAGCCGGAGATTCGGAAAGTTCATCTTGGTGTAGCAGTTCTGAGAATCCTTGCTTTAGGAGTGAAGGACATGCAAGATTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCAATAGATATGGCAATCCGGAATCTAATTCAATTAGGAGCCATTGAACTGAACAATAATGCTCATGATTTAACTTCTGAAGGTTGGTGCTTGGTGAGAATGGGAATTGAACCTAGGCTTGGGAAACTTATTCTTGGTTGTTTCAAACATGGTTTGGGTAGGGAGGGTATCATCCTTGCTGCTGTGATGGCCAATGCTAGTAGCATCTTTTGCAGAGTTGGCAGTGAATTTGATAAGCAAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCATCAGGAGGTGTCAAGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACATGACATTGTTACTCCAAGTTACTGGCTTTGGGACCCTTGTATGCCCTCTAATCATGATAAGAATTTGAAAAGGGTAATACTGTCCTCACTTGTTGAGAATGTAGCCATGTACTCTGGCTGCAATCAACTTGGTTATGAAGTGGCGCAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTGAGAAACCAAGTTGGGTAGTTTTTGGTGAGCTTCTTTCCATTTCTAATCAATATTTGGTCTGTGTGTGTGCATTTGACTTTCAATCTTTATTCAACCTTTGCCCTGCTCCCTTGTTTGATGTATCCAAAATGGAAGAGCGGAAGTTGCTAATGAAGACACTGTCTGGTCTCGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAACTGCGATTTGCTTGCTCTTGTTTCACGTATAAGGAAAGCTTGTATGGATGAACGCATCTTCATTGAAGTGAATGTTGACAAGAATGAAATCCACTTATATGCCACTTCAAATGAGATGGATATAGCCCTTGGGTTGGTTAATGGTGTTCTAGAATATGAGAGGAAGTTGTTACGCACGGAATGTATGGATAAGTTTTTGTATCATGGGTCTGGTTTCTCTCCACCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGTGTCATCCAAACATAAATGAAATTGATGACAGGGAGCTCTTGATGTTTTTTGAGAAGAATACCTCTGGTTGCATCTGTGCTGTGCACAAATTCACAGGCAATATGAGGGATGGAGATAGGGATAAGTGGGGCAGGATAATATTTATGTCCCCTGATGTTGTCAGAAGAGCTGCTGAGCTAGATGGACAAGAGTTTTGTGGCTCATCCTTGAAAATTGTTCCTTCACAGTTGGGATGGGATAAAACATTTTCGTTCCCTGCTGTTAAAGCAAGAATTTCTTGGCCTCGTAGGCTTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAGGATGTCAATTATATCTTGAGAGATTTCTATAACCTTGCAGTAGGAGGAAGGTATGTTCGATGTGAAATTGGCAAAAAGAGTATTGACAGCGTTGTTATAAATGGGCTTGACAAAGAGCTTTCGGAAGCTGAAATAGTGGATGTGCTAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCTGCTGGAAATCCACCATGCAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTACCCCTTTTTGCCGAAAAGGAACCCTCACATTATTCCTTGCCGAGTTCAGGTGTTTGCACCTGAGCCTAAGGATTCTTTCATGAGAGCTTTGATCACTTTTGATGGAAGATTACATTTAGAGGCAGCGAAAGCATTGGAGCAAATTGAGGGAAAGGTGTTACCTGGATGTCTTTCATGGCAAAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCATTATATTTCCCACTCCAGTGTATCATGTGATTAAGGAACAACTGGATGAAGTACTTGCAAGCTTCAGGAATTTGAAAGGTCTTGAATGCAACCTGGGCAGGACAGTTAATGGTTCTCACCGAGTGAAGATAACGGCAAATGCCACAAGGACAGTGGCGGAAGTTAGAAGACCTCTGGAAGAACTATTGAGAGGGAAAACCATTGAGCATGACAGCCTCACCCCTGTAGTTTTCCAACTCATGTTGTCCAGGGATGGCTTTAGTCTTAAAAACTCATTGCAGCAAGAGACGGGAACTTATATTCTTTTTGACAGACACAACTTAAATTTACGGGTGTTTGGTTCCCCAAACAAGGTTGCTTTGGCTCAGGAGAAGGTGATACAGTCCCTCCTTTCTCTCCATGAAGAAAAGCAGTTAGAAATTCATCTGAGAGGGATGGATCTACCTCCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTCCGTGGACTGAAAGAGAAGGTACCTGGGGTAGATCTTACACTCAACACACGTCGCCATATAGTCATTCTTCATGGTAGCAAGGAGTTGAAACCGAGAGTAGAGGAAATAATTTTTGAGATTGCTCGTTCAAGCCATCATTTGGTTGAGAGATTTGAAAATGGACCCAGTTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGATACCGGCTTGAAGGCTGTGGTCATTTGTTCTGCGGGTTGTGTCTGGTTGAGCAATTTGAATCTGCTATTAATAACCAAGGCACTTTCCCAGTATGTTGTACTCACAGGGACTGTGGAGATCCCATCCTGCTTACAGATTTGAGATCTCTTTTATTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCAACGAGTGGGGGAGCTTACAGGTTTTGCCCTTCTCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCCGAGTCTGCTGGTGAGCCATTTGTTTGTGGGGCTTGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGTGAGAGATATCAAGAATTCAAGGAAGATCCGGACTCATCTCTGAAAGAGTGGTGCAGAGGGAAAGAACAAGTTAAGTGCTGCTCGGCATGTGGGTATGTAATTGAGAAGGTAGATGGGTGCAACCACGTTGAGTGCAAGTGCGGAAAGCATGTCTGTTGGGTTTGCTTAGAGTTCTTTAGTACTAGTAATGACTGTTATAACCATTTGAGAACCATACACTTGGCCATCATATAA 5211 0.4481 MKKATNPNPFSTPRRHDFHRPPPPTHGCGWTPRPVHHRPYHQWRPRFQPHAARIDRPPEPYFRVELRLGRCPLHRDDVEALIDECRSSHDSFTFYPTDDVAAVLNYRSWEQARDAVVWFWEARLAEKHDFTPALDSNVVVVKDDVDCRLRPVFARHVKGLMMMEEGKEVKFWMDECERLAKEISRLSSSLSKPLRIGTQNELMKKKKGLVDEKNLVERRLKEFESAMQCLLKYLEDGGDDVEGVKVFRFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRRDILQEIHYQQIMVLIGATGSGKSTQLVQFLADSGVGSDESIVCTQPRKIAAKAVAQRVQQESSGCYEGQSIKYCSTFLSSREFDSRITFMTDHSLLQHYMSDNNLSGVSCIIIDEAHERSLNTDFLLTLLKSLLCRRVEMRLIIMSATADAKQLSDYFFGCGIFHVLGRSFPVDIKYVPSDCGGDSGSAVVASYVSDVVRMATEIHKTEKEGTILAFLTSQIEVEWACEKFQAASAVALPLHGKLSSDEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVRYVIDSGLVKDSRFDPSSGMSVLKVCWISQSSADQRAGRAGRTEPGVCYRMYLEADYQSMDLNTEPEIRKVHLGVAVLRILALGVKDMQDFDFVDAPSPSSIDMAIRNLIQLGAIELNNNAHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIILAAVMANASSIFCRVGSEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSIRRCQDTILELETCLEREHDIVTPSYWLWDPCMPSNHDKNLKRVILSSLVENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAEKPSWVVFGELLSISNQYLVCVCAFDFQSLFNLCPAPLFDVSKMEERKLLMKTLSGLGCILLKRFCGKANCDLLALVSRIRKACMDERIFIEVNVDKNEIHLYATSNEMDIALGLVNGVLEYERKLLRTECMDKFLYHGSGFSPPVALFGSGAEIKHLELEKRSLSVDVCHPNINEIDDRELLMFFEKNTSGCICAVHKFTGNMRDGDRDKWGRIIFMSPDVVRRAAELDGQEFCGSSLKIVPSQLGWDKTFSFPAVKARISWPRRLSRGFAIVKCDIKDVNYILRDFYNLAVGGRYVRCEIGKKSIDSVVINGLDKELSEAEIVDVLRTATSRRILDFFLVRGDAAGNPPCSALEEALLKEIYPFLPKRNPHIIPCRVQVFAPEPKDSFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSIIFPTPVYHVIKEQLDEVLASFRNLKGLECNLGRTVNGSHRVKITANATRTVAEVRRPLEELLRGKTIEHDSLTPVVFQLMLSRDGFSLKNSLQQETGTYILFDRHNLNLRVFGSPNKVALAQEKVIQSLLSLHEEKQLEIHLRGMDLPPDLMKQMIKNFGPDLRGLKEKVPGVDLTLNTRRHIVILHGSKELKPRVEEIIFEIARSSHHLVERFENGPSCPICLCEVEDGYRLEGCGHLFCGLCLVEQFESAINNQGTFPVCCTHRDCGDPILLTDLRSLLFGDKLEDLFRASLGAFVATSGGAYRFCPSPDCPSIYRVADPESAGEPFVCGACYSETCTRCHLEYHPYLSCERYQEFKEDPDSSLKEWCRGKEQVKCCSACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSTSNDCYNHLRTIHLAII* 1737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1490 1736 CDD SF2_C_RHA 451 611 - -
Gso13g1490 1736 SUPERFAMILY RING/U-box 1681 1729 - -
Gso13g1490 1736 Gene3D - 260 449 IPR027417 -
Gso13g1490 1736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 447 IPR014001 -
Gso13g1490 1736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 781 IPR027417 -
Gso13g1490 1736 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 389 398 IPR002464 -
Gso13g1490 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1524 1602 IPR013083 -
Gso13g1490 1736 MobiDBLite consensus disorder prediction 1 33 - -
Gso13g1490 1736 Pfam IBR domain, a half RING-finger domain 1607 1659 IPR002867 -
Gso13g1490 1736 SUPERFAMILY RING/U-box 1611 1665 - -
Gso13g1490 1736 ProSitePatterns Zinc finger C2H2 type domain signature. 1711 1732 IPR013087 -
Gso13g1490 1736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 643 IPR001650 -
Gso13g1490 1736 Pfam Helicase conserved C-terminal domain 485 602 IPR001650 -
Gso13g1490 1736 Pfam Helicase associated domain (HA2) 664 758 IPR007502 GO:0004386
Gso13g1490 1736 SMART ha2_5 663 759 IPR007502 GO:0004386
Gso13g1490 1736 ProSiteProfiles TRIAD supradomain profile. 1523 1731 IPR044066 -
Gso13g1490 1736 CDD DEXHc_RHA-like 290 446 - -
Gso13g1490 1736 ProSiteProfiles Zinc finger RING-type profile. 1527 1569 IPR001841 -
Gso13g1490 1736 Pfam DEAD/DEAH box helicase 281 434 IPR011545 GO:0003676|GO:0005524
Gso13g1490 1736 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1558 1651 - -
Gso13g1490 1736 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 101 1480 - -
Gso13g1490 1736 Coils Coil 206 226 - -
Gso13g1490 1736 Gene3D - 647 752 - -
Gso13g1490 1736 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 827 906 IPR011709 -
Gso13g1490 1736 SMART ultradead3 271 456 IPR014001 -
Gso13g1490 1736 SMART ibrneu5 1591 1659 IPR002867 -
Gso13g1490 1736 SMART ibrneu5 1660 1724 IPR002867 -
Gso13g1490 1736 SUPERFAMILY RING/U-box 1526 1586 - -
Gso13g1490 1736 SMART helicmild6 505 603 IPR001650 -
Gso13g1490 1736 Gene3D - 450 622 IPR027417 -
Gso13g1490 1736 Gene3D - 1637 1733 - -
Gso13g1490 1736 PANTHER ATP-DEPENDENT RNA HELICASE 101 1480 - -
Gso13g1490 1736 PANTHER ATP-DEPENDENT RNA HELICASE 1558 1651 - -
Gso13g1490 1736 ProSitePatterns Zinc finger RING-type signature. 1543 1552 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1490 Gso-Chr13 30414689 30421378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1490 1539 1714 ARIADNE family AT3G27710 31.111 3.02e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1490 K12818 - gmx:100806464 3508.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0129 18 1071629 1078299 Gso13g1490 13 30414689 30421378 GST