Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1489 ATGAAGAGACTTAACAGCTCAGATTCTTCCACTGCCCTCATGACAATTTTTCCATCATCATCAACAGAGGAACATAGTCCGAGGAACAGCCACCACATGTATGGCAGGGAGTTCCGATCGATGTTGGACGGACTCGACGAGGAAGGGTGTGTTGAAGAACCGGGGCATCAATCTGAGAAGAAGCGTCGACTAAGTGTGGAACAAGTGAAGGCTTTGGAGAAGAACTTTGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAGCTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCCGTTTGGTTCCAAAACCGCCGAGCCAGATGGAAAACCAAACAATTGGAGAGAGATTATGGTGTCCTCAAAGCCAATTATGATGCTCTTAAGCTTAACTTTGGCACCCTCAATCAGGACAACGAAGCCTTACGAAAGCAGATAAAGGAATTGAAATCGAGGCTGCTGCAAGAAGAGAACACAGCAGGAAGCGGTGTTTCGGTGAAGGAAGAAGAGATAACAACGATGCCTGCAGACTCAGAAGAGAAAACGATGGAACAAAGTAAGAGTGACCCACCTTCTGAAACCTCGAACATTAATCCTAGTTCGGAGTCGTCGGAGGAGGACCACTTGAATTACGAATGTTTCAACAACAACAGCGACGACTGTGTCGTCGGAGGATCCGCCGCAGCATCGCTCTTGCAAGTGGACTTCATGAAAGACGGTTCTTCCGACAGCGACGGATCAAGCGCGATCTTGAACGAAGACACCATGTACTTGCCGTCTTCGATGAACTGTTTTCAGTTCCAGAAACCGTATCATCACGCGCAGTACGTGAAGACGGAGGAGCACAATTTCTTGAGCGCCGATGAGGCCTGCAATTTCTTCTCCGATGAACAAGCACCGACCCTGCAATGGTACTGTCCAGAACAGTGGAGCTGA 945 0.4836 MKRLNSSDSSTALMTIFPSSSTEEHSPRNSHHMYGREFRSMLDGLDEEGCVEEPGHQSEKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFGTLNQDNEALRKQIKELKSRLLQEENTAGSGVSVKEEEITTMPADSEEKTMEQSKSDPPSETSNINPSSESSEEDHLNYECFNNNSDDCVVGGSAAASLLQVDFMKDGSSDSDGSSAILNEDTMYLPSSMNCFQFQKPYHHAQYVKTEEHNFLSADEACNFFSDEQAPTLQWYCPEQWS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1489 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 263 306 IPR045224 GO:0003700
Gso13g1489 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 258 IPR045224 GO:0003700
Gso13g1489 314 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Gso13g1489 314 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Gso13g1489 314 SMART HOX_1 58 119 IPR001356 GO:0003677
Gso13g1489 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 258 - -
Gso13g1489 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 263 306 - -
Gso13g1489 314 Pfam Homeobox associated leucine zipper 115 156 IPR003106 GO:0006355|GO:0043565
Gso13g1489 314 MobiDBLite consensus disorder prediction 160 211 - -
Gso13g1489 314 CDD homeodomain 60 116 IPR001356 GO:0003677
Gso13g1489 314 SUPERFAMILY Homeodomain-like 40 117 IPR009057 -
Gso13g1489 314 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Gso13g1489 314 Gene3D - 16 116 - -
Gso13g1489 314 MobiDBLite consensus disorder prediction 1 24 - -
Gso13g1489 314 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Gso13g1489 314 MobiDBLite consensus disorder prediction 191 207 - -
Gso13g1489 314 MobiDBLite consensus disorder prediction 1 31 - -
Gso13g1489 314 Coils Coil 114 162 - -
Gso13g1489 314 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Gso13g1489 314 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1489 Gso-Chr13 30395093 30397731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1489 1 308 Homeobox Transcription Factor Family AT2G22430 49.699 1.21e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso13g1489 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1489 K09338 - gmx:100781155 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0130 18 1099493 1102104 Gso13g1489 13 30395093 30397731 GST
Gso5g1491 5 38343554 38345839 Gso13g1489 13 30395093 30397731 PCT
Gso8g1120 8 10272382 10274649 Gso13g1489 13 30395093 30397731 PCT