Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1479 ATGATTCCACTTCTGCTCCCGGTTTCATTTGTTCTCTCTCTTTTTGTGTGGTTGACCCCTATCTCGGTTGATGTCAGTGGAAAAATGGATTTGGCATCTGTTCTTTTGCTATTAACTAGCTTATGCTCTTCTTCTGCACTGGCTGAGCTTGATTCACAAGAAGATGCACTGTATGCATTGAAGGTATCATTGAATGCTTCTCCCAACCAGCTTACAAACTGGAACAAAAATCTAGTAAACCCTTGTACTTGGTCCAATGTTGAATGTGACCAGAATAGCAACGTTGTTCGAATTTCACTAGAATTTATGGGATTCACAGGATCATTGACACCAAGAATAGGATCTCTAAATAGTCTTACAATTCTTTCTTTGCAAGGGAATAACATCACTGGTGACATACCAAAAGAATTTGGAAATCTTACAAGCTTGGTCAGATTGGATTTGGAAAACAACAAATTAACTGGTGAAATACCATATTCACTTGGTAATCTTAAAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTCAATGGGACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTATGCTAGATTCAAATGATCTCAGCGGGCAGATTCCTGAGCAGTTATTCAGCATTCCTACGTACAATTTCACTGGAAATAATTTGAACTGTGGTGTGAATTATCTTCATCTTTGCACATCTGATAATGCATATCAAGGTTCGTCACATAAAACAAAAATAGGCCTCATAGTTGGAACAGTTACAGGTTTAGTTGTTATTCTTTTTCTTGGTGGCCTGCTGTTCTTCTGGTACAAGGGGTGCAAGAGTGAAGTTTATGTAGATGTTCCAGGTGAAGTCGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATATTTTAGGACAGGGAGGTTTTGGAAAGGTTTATAAAGGTATTCTAGCTGATGGCACCAAAGTTGCTGTCAAAAGGTTAACCGATTATGAAAGTCCTGCGGGTGATGCAGCTTTCCAGCGTGAAGTGGAGTTGATAAGCATAGCTGTCCATAGGAACCTGTTACGGCTCATTGGTTTTTGTACTACTTCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAAACGTGGGGAAGCCGTTTTAGATTGGCCTACCAGAAAACGAGTGGCTCTAGGAACAGCCCGTGGCCTAGAATATCTTCACGAGCAATGCAATCCTAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTTGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTAGCAAAATTAGTTGATATTCGACATACTAATGTGACAACTCAAGTTCGTGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACAGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTCGTAACAGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGACGTGTTATTGCTTGACCATGTTAAGAAACTGCAACGGGAGAAAAGACTAGAGACTATTGTTGACTGCAACCTTAATAAAAATTACAACATGGAAGAGGTTGAAATGATTGTACAAATTGCATTACTCTGCACACAAGCATCGCCTGAGGATCGTCCAGCAATGTCAGAGGTTGTAAGAATGTTAGAGGGAGAAGGGCTAGCTGAAAGATGGGAGGAATGGCAGCATGTGGAGGTCAATACAAGGCAAGATTATGAGAGACTGCAAAGAAGAATGAACTGGGGAGAAGATTCGGTTTATAACCAAGATGCAGTTGAGTTATCGGGTGGAAGATGA 1902 0.4012 MIPLLLPVSFVLSLFVWLTPISVDVSGKMDLASVLLLLTSLCSSSALAELDSQEDALYALKVSLNASPNQLTNWNKNLVNPCTWSNVECDQNSNVVRISLEFMGFTGSLTPRIGSLNSLTILSLQGNNITGDIPKEFGNLTSLVRLDLENNKLTGEIPYSLGNLKKLQFLTLSQNNLNGTIPESLASLPSLINVMLDSNDLSGQIPEQLFSIPTYNFTGNNLNCGVNYLHLCTSDNAYQGSSHKTKIGLIVGTVTGLVVILFLGGLLFFWYKGCKSEVYVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGILADGTKVAVKRLTDYESPAGDAAFQREVELISIAVHRNLLRLIGFCTTSTERLLVYPFMQNLSVAYRLRELKRGEAVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEAVVGDFGLAKLVDIRHTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLETIVDCNLNKNYNMEEVEMIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVNTRQDYERLQRRMNWGEDSVYNQDAVELSGGR* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1479 633 Gene3D Ribonuclease Inhibitor 50 233 IPR032675 -
Gso13g1479 633 Pfam Protein kinase domain 311 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1479 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Gso13g1479 633 Pfam Leucine rich repeat N-terminal domain 51 90 IPR013210 -
Gso13g1479 633 Gene3D Phosphorylase Kinase; domain 1 279 386 - -
Gso13g1479 633 SMART serkin_6 310 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1479 633 SUPERFAMILY Protein kinase-like (PK-like) 289 585 IPR011009 -
Gso13g1479 633 SUPERFAMILY L domain-like 52 224 - -
Gso13g1479 633 PANTHER LRR RECEPTOR-LIKE KINASE 29 633 - -
Gso13g1479 633 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Gso13g1479 633 Gene3D Transferase(Phosphotransferase) domain 1 387 604 - -
Gso13g1479 633 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Gso13g1479 633 ProSiteProfiles Protein kinase domain profile. 310 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1479 633 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 29 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1479 Gso-Chr13 30275016 30283752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1479 28 633 Receptor kinase-like Gene Family AT5G10290 72.459 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso13g1479 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1479 - - gmx:100786654 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0145 18 1216717 1223750 Gso13g1479 13 30275016 30283752 GST
Gso13g1479 13 30275016 30283752 Gso5g1219 5 35679643 35686911 PCT
Gso13g1479 13 30275016 30283752 Gso8g0832 8 7726866 7733723 PCT