Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1477 ATGTCCAATTCAAACTCCAATCCGACCCGAATACTTCACTCTCAGTCCCAGGATCCGAATACTACCACCGCGGACCCTCATGTTCTGCTTCAGAACCTTTCCCTGGTTCGGACCAGAATGGATTCTCTACAACACTTCCTATCTCAATCCATCAACACCAACACTCCCCTCGCCGTCGATCAAATCGCCATGGTCTCCAGCCAGATCGTCTCCTCCATCCATCAATTGATCGTCAACGGCTCAGCTCTCGTCTCTTACTCTCAAAATTCCACCGCCGCCTCCGGAGCACCGGATCCACCGTTGTATCCGAAGAAGCCGGAGCCGGAACCTTCAGTCGCCGATAAAGCGAAGCAAATACTCGATTCCAAATTTGGGCCTCTCGAAGACGACGACGACGACGACGGCGGCGCCGAAGACTTCGACGACGGTAGCGGAATCGTGGAGCTCGACGCCATAGAAATCCTCGCCGAGCACATGCACTTCTGCGAGATCTGCGCGAAAGGCTTCCGGCGCGACTCGAACCTCCGCATGCACATGCGCGCGCACGGAGAACAGTTCAAGACGGTGGAGGCGCTGGCGAAGCCTTCGGAGACCACTGCGCAGCGGCGCGCGACGCGGTTTTCGTGTCCGTTCGAAGGCTGCAACCGGAACAAGCTCCACCGGCGGTTTCGGCCGCTGAAATCGGTGATTTGCGTGAAGAACCACTTCAAGCGGAGCCACTGCCCGAAGATGTACACGTGCGAGCGGTGCCGCAAGAAGCACTTCTCGGTTCTCTCGGATTTGAGGAGCCACGCGAAGCACTGCGGAGGAGAGGCCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGAGAAAGGACAAATTGTTTGGTCACATTGCGCTGTTTGAGGGCCACGCGCCTGCTCTCGCGTGTGACGAAGAGGGTAAAGGGAAACAAGTGGTGGAGGATGACGAAGATCCGATGTTGATGAATGAAAGTGAATTTGAATCGGATAATTGCCTTTTGAATCAAGAATTGCCGGAAGGGTTCTTTGATGATTTTCGGTCCATTGATGACTACTGTTTAAAGGAAGTGTTAGGTTTTCATAGTAATTGA 1095 0.5452 MSNSNSNPTRILHSQSQDPNTTTADPHVLLQNLSLVRTRMDSLQHFLSQSINTNTPLAVDQIAMVSSQIVSSIHQLIVNGSALVSYSQNSTAASGAPDPPLYPKKPEPEPSVADKAKQILDSKFGPLEDDDDDDGGAEDFDDGSGIVELDAIEILAEHMHFCEICAKGFRRDSNLRMHMRAHGEQFKTVEALAKPSETTAQRRATRFSCPFEGCNRNKLHRRFRPLKSVICVKNHFKRSHCPKMYTCERCRKKHFSVLSDLRSHAKHCGGEARWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEGKGKQVVEDDEDPMLMNESEFESDNCLLNQELPEGFFDDFRSIDDYCLKEVLGFHSN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1477 364 SUPERFAMILY beta-beta-alpha zinc fingers 157 184 IPR036236 -
Gso13g1477 364 MobiDBLite consensus disorder prediction 108 125 - -
Gso13g1477 364 MobiDBLite consensus disorder prediction 126 143 - -
Gso13g1477 364 MobiDBLite consensus disorder prediction 1 25 - -
Gso13g1477 364 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Gso13g1477 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Gso13g1477 364 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 6 360 - -
Gso13g1477 364 SMART c2h2final6 207 240 IPR013087 -
Gso13g1477 364 SMART c2h2final6 245 267 IPR013087 -
Gso13g1477 364 SMART c2h2final6 160 182 IPR013087 -
Gso13g1477 364 MobiDBLite consensus disorder prediction 89 143 - -
Gso13g1477 364 Gene3D Classic Zinc Finger 243 294 - -
Gso13g1477 364 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 6 360 IPR044300 GO:0010044|GO:0010447
Gso13g1477 364 Gene3D Classic Zinc Finger 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1477 Gso-Chr13 30254686 30256034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1477 127 306 C2H2 Transcription Factor Family AT1G34370 56.757 2.93e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1477 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1477 - - gmx:100809135 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0146 18 1240419 1241755 Gso13g1477 13 30254686 30256034 GST