Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1466 ATGGGAGGCAATTCACCTGAGAGGAAACCTGGTTGTGGCTTGATGACAGCAGTATTTAGACGAAATAATCCATGGTCACGCAAATCAGTCTCTGCAGGTTCTTCTCCTATGGCCCACAATTTTGAAAAACCATCTAACACTCAAGATTCAAAACGGAGACATGGAGGATCTAATGATTTTGTTCCAATTAAAGAATCTTCACATAATAATAACAACAATGATGTTACAAACTACTCTTCTCGTTCTGTCCCCAATCCTCAAAGGCCAACAACACCACATGTTGTAAGCCAAAGGAAACCACAACAAAATCGCGATGAAACAACAATGGGAAAAGGGTCTTCACCTTCACCCACTCAGGGCTATATCAACCAAGGCAAAAGGGTACCAAAAGAAGCTGTTGGAATCTCTGGTGAACTTGAAAGCATGATCAATGAACACCTAAAGTCCAAGGGAAGTAGTACCCTTGGTAATTTAGGTAACCTTAGGCAAGGAGGAGTAGGACCAAAACATCACAATGCTTACAGTGAAATGGATTACTATGCTAGTAATGTTGCTAGTGGAGGACACACAAATCAAATCACAGGACGTGAATATGATAAAACTAGTTTTTATGGCAAGGAAGCTAAACCAAGCAAGGAACAATCAGGTTCACTGTGTAGGGCTGTGTCTACACGAATGGATCCTGAACAATTGAAGATAATGGGCAATGAGGATTACAAGAATGGAAGGTTTGCAGAGGCATTGGCTTTGTATGATGCTGCCATCGCAATTGACCCGAATAAGGCTTCTTATAGGAGCAATAGAAGTGCTGCATTAACTGCTCTTGGAAGGCTTTTGGAGGCTGTTTTTGAATGTAGAGAAGCTATTCGGATTGAGTCTCATTACCAAAGGGCCCATCATCGGTTGGGAAATTTGAACTTAAGATTAGGAGAAACAGACAAAGCTTTATATCATTATAAACAAGCAGGACCAGACGCTGATCCAGATGAGATTGCTAAAGCAAAGACACTCCAAGTATATCTAAACAAATGCACCGAGGCTCGTAGGTTCGGCGATTGGATCACACTTATAACTGCAACCAACAATGCTATATCATCTGGTGCAGACTCTGCTCCACAAATATATGCATTACAAGCCGAAGCCTTGCTAAAGCTTCATAGACATCAAGATGCAGACAAAGTAATGTCAAGGTGCCCTAAATTTGATGTTGATCAGTGTACTAGGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGTGACACGGGCTCAAGTTGATTTAGTTGCTGGCAGATTTGAAGAAGCTCTGGAGGCAGCACAGAAAGCTACTAGGTTGGATTCTAATAGTAGAGAAGCAAATAAGGTGATGAGAAAGGCTCGAGCTTTGACAAGTGCTCGTGCAAAGGGAAATGAGCTTTTCAAGGCATCAAATTTTCATGAGGCTTGCATTGCCTATGGAGAAGGCCTTGACCATGATCCATATAACTCTGTTTTACTATGCAACAGAGCTGCTTGTAGATCAAAGCTAGGCCAATTTGAGAAAGCAATAGATGATTGCAATACTGCCCTTAACTTACGCCCGTCTTACATCAAGGCCAGGTTGAGAAGGGCAGATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATACAAGACTATGAAATTTTACTAAAAGAGACACCGGAAGATGAAGAAGTAAAGCGAGCATTGATGGAGGCTCAAGCACAACTTGAGAAACAGGCAAGGTGA 1749 0.4162 MGGNSPERKPGCGLMTAVFRRNNPWSRKSVSAGSSPMAHNFEKPSNTQDSKRRHGGSNDFVPIKESSHNNNNNDVTNYSSRSVPNPQRPTTPHVVSQRKPQQNRDETTMGKGSSPSPTQGYINQGKRVPKEAVGISGELESMINEHLKSKGSSTLGNLGNLRQGGVGPKHHNAYSEMDYYASNVASGGHTNQITGREYDKTSFYGKEAKPSKEQSGSLCRAVSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIESHYQRAHHRLGNLNLRLGETDKALYHYKQAGPDADPDEIAKAKTLQVYLNKCTEARRFGDWITLITATNNAISSGADSAPQIYALQAEALLKLHRHQDADKVMSRCPKFDVDQCTRFFGPIGNANLLVTRAQVDLVAGRFEEALEAAQKATRLDSNSREANKVMRKARALTSARAKGNELFKASNFHEACIAYGEGLDHDPYNSVLLCNRAACRSKLGQFEKAIDDCNTALNLRPSYIKARLRRADCNAKLERWEASIQDYEILLKETPEDEEVKRALMEAQAQLEKQAR* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1466 582 MobiDBLite consensus disorder prediction 22 44 - -
Gso13g1466 582 Coils Coil 536 556 - -
Gso13g1466 582 SUPERFAMILY TPR-like 467 579 IPR011990 GO:0005515
Gso13g1466 582 ProSiteProfiles TPR repeat profile. 416 449 IPR019734 GO:0005515
Gso13g1466 582 MobiDBLite consensus disorder prediction 45 59 - -
Gso13g1466 582 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 581 IPR044534 -
Gso13g1466 582 Pfam TPR repeat 235 276 - -
Gso13g1466 582 SUPERFAMILY TPR-like 228 451 IPR011990 GO:0005515
Gso13g1466 582 SMART tpr_5 462 495 IPR019734 GO:0005515
Gso13g1466 582 SMART tpr_5 262 295 IPR019734 GO:0005515
Gso13g1466 582 SMART tpr_5 296 330 IPR019734 GO:0005515
Gso13g1466 582 SMART tpr_5 228 261 IPR019734 GO:0005515
Gso13g1466 582 SMART tpr_5 416 449 IPR019734 GO:0005515
Gso13g1466 582 SMART tpr_5 496 529 IPR019734 GO:0005515
Gso13g1466 582 SMART tpr_5 530 563 IPR019734 GO:0005515
Gso13g1466 582 MobiDBLite consensus disorder prediction 1 127 - -
Gso13g1466 582 Pfam Tetratricopeptide repeat 498 529 IPR001440 GO:0005515
Gso13g1466 582 Gene3D Tetratricopeptide repeat domain 226 582 IPR011990 GO:0005515
Gso13g1466 582 MobiDBLite consensus disorder prediction 62 123 - -
Gso13g1466 582 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Gso13g1466 582 PANTHER OS01G0616333 PROTEIN 5 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1466 Gso-Chr13 30151808 30154595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1466 229 303 U-box Gene Family AT3G07370 34.667 7.65e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1466 - - gmx:100811282 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0158 18 1342991 1345868 Gso13g1466 13 30151808 30154595 GST