Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1463 ATGACAACATTTATGGACATGTACAACACTACTAGTAGCATCATGACACCGGATTTCTTAGACCAGTGTAGTGATCAAGAGCTGATGAAAGCACTTGAGCCTTTTATGAAAAGTGATTCATCTAGCACTACTTCCTCATCAATAACAACATACCCTTCATTCTCTTCTTTTTCTTCTTCTCCCAACTTGTCCTCAACAACATGGAGCACCCAATTTTGCTCCTCAAGCTACCACCAAAAGGGTCCAACTCCAACCCAAGCTAGTTCCTTCAAACTGAACCAACTCACCCCATCACAAATATTTCAAATTCAAACCCAAATCCAGGTTCCACGAGCCCAGTTTCTCAGCCCAAAGCCCATTACCATGAAACACGTGCGGGCTTCTTGTTCTAATTCAAAGGCCACGAAGCTTTACCGTGGGGTGAGGCAGAGACACTGGGGCAAGTGGGTCGCTGAGATCAGACTCCCTAAGAACCGCACACGTCTCTGGCTCGGTACATTTGAAACCGCAGAGGAAGCAGCTTTGGCTTACGACAACGCAGCGTTTAAGCTAAGAGGAGAAAACGCGAGGCTCAACTTCCCTCACCTACGTCACCATGGAGCGCGTGTGTACGGTGAGTTTGGGAACTACAAGCCTCTCCCTTCTGCGGTTGATGCGAAGCTCCAAGCCATTTGTCAAAGCTTAGGGACCAAATTGCAGAAACTGAAAACTGATCAAAACCCTGTTGTAGATGCAAAGGTTAAGAAGACATCGAAGTTCGAGGATTTTAAGATTGAGAACCGAACATCATCATCCTCGGCGTTGTCGGATGAATATTCTTCTTCTTCTTCTTCGCCCGAATCCGATATTACTTTCTTGGATTTCTCGGATTCTTGTGAAACAACATGCAATCTTGGGTTGGACTTGGAAAAGTATCCTTCCGTGGAGATTGATTGGGCAGCTTTATCTGAGTCATGA 957 0.4566 MTTFMDMYNTTSSIMTPDFLDQCSDQELMKALEPFMKSDSSSTTSSSITTYPSFSSFSSSPNLSSTTWSTQFCSSSYHQKGPTPTQASSFKLNQLTPSQIFQIQTQIQVPRAQFLSPKPITMKHVRASCSNSKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFPHLRHHGARVYGEFGNYKPLPSAVDAKLQAICQSLGTKLQKLKTDQNPVVDAKVKKTSKFEDFKIENRTSSSSALSDEYSSSSSSPESDITFLDFSDSCETTCNLGLDLEKYPSVEIDWAALSES* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1463 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 314 - -
Gso13g1463 318 SMART rav1_2 137 200 IPR001471 GO:0003700|GO:0006355
Gso13g1463 318 ProSiteProfiles AP2/ERF domain profile. 137 194 IPR001471 GO:0003700|GO:0006355
Gso13g1463 318 Pfam AP2 domain 138 187 IPR001471 GO:0003700|GO:0006355
Gso13g1463 318 Gene3D AP2/ERF domain 137 195 IPR036955 GO:0003700|GO:0006355
Gso13g1463 318 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Gso13g1463 318 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Gso13g1463 318 SUPERFAMILY DNA-binding domain 137 195 IPR016177 GO:0003677
Gso13g1463 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 314 - -
Gso13g1463 318 CDD AP2 136 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1463 Gso-Chr13 30112212 30113805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1463 1 315 AP2-EREBP Transcription Factor Family AT1G78080 46.199 3.62e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g1463 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1463 K09286 - gmx:100815162 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0160 18 1378841 1380464 Gso13g1463 13 30112212 30113805 GST