Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1450 ATGGAAAGAAATGGTGATGGGAAGGCTCAAGATTCAGAGCCTCTACCTCCTCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCTTTGAAGCAGTTATTGGAGCTTATTGATATGCGAGAAAACGCTTTCAGTGCTGTTGGCTCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTTAGGGTGAAAGTCTTGCTTGGAGGTTGCATTCCTCCTTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTAGCTGCGGCAAAGACTATTTTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGCTATGGGAGCAGCTGCAAAAGGGCCTGAAGACTGGAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAAAATCTCTCCAGTAGCACTGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTGGACATATTAATTAAGTTACTGACAACAGGGCAGTCTAGCACTTTAGCAAATGTGTGCTTTTTACTGGCTTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGTTGTTGACAGCAGAGGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTCAGGGCTGAGGCAGCCGGTGCTCTTAAAGCTCTATCTGCCCAGTGCAAAGATGCAAGGAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCGTTACAGGAGAATGCTATGTGTGCTTTAGCAAACATTTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCTCCTACTCAAGCTGCCGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTACCAGGGCATCAGATCCTTTGGTAGTAGAGCAGACATTACTTGAACAATTTAAACCCGGCTTACCATTCCTTGTGCAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCTATACTGTCAATTAAACTTACAAATTCTGATGCAAAGCATTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTATGGCTTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTTCCCTCCTTTGCCTTTTATCTAATGAAAATGATGAAAGCAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCAACAATCCTTAGGAACCTATGCGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCCGTTCCTGCATTGCTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCCAAGACTTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGACGCAATTGTTACAATGATAAAACTTTTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCATCTGCTCTGGCGGGAATTTTCGAAACGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCTGAAAGTATCTTAATGGAGTCCTCGCGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAAGGATGTGGCTGCTATTGCTAGAGATGCATTACTCTCCCTAGTTGCACTAGCTAACTCTTCAGTTTTAGAAGTGGCAGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAGGTCATCTTGGCTGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACACATGCTGCTGCAGCAATTGCTCGCCTCTTACATTGTAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGATTTTGCTATTGATGGACATAGTTCCACATCAGAAGCTCTTGAAGCACTTGCCATGCTGTCCAGGTCAGATGTGACCGGTGCACACAGTAAACCTGCTTGGGCAGTTTTAGCTGAATTTCCTAAAAGCATAAGCCCGATAGTTTTGTCTATTGCTGATTCAACGTCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTTTGTTCTGGGAGACAGTGTTGTTACTGCCTCTGGATGTATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTAAAAATGTAAAGGTCAAAATTGGAGGGGCTGCTGTTCTTATTTGTGCTGCTAAACTAAATCATCAGAGGCTGGTGGAGGATCTCAATAGATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTGGTCGATATGCTTATTTCTTCACAGGCTACTTTGGATAATCAGGGTGATGACAGCAGGGAAGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAACACTGGTACCGCTATTATTTCTGGTGCCAACTTAGCTGTATGGTTACTGTCTGTTCTTGCTTGCCATGATGAAAAAAGTAAAATTGCAATAATGGAGGCAGGAGCAATTGAGGTTCTCACTGACAGGATTGCAGATTGTTTCTCACAATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACCATGAAATCTATACCAGCCCTTGCCAACTTATTGAAGTCAGAGGAATCAGCGAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATTCTGATATACAGGATCTTCTGGAATTGTCAGATGAATTTTCTTTGGTGCATTATCCTGACCAAGTTGCTCTCGAGAGGTTGTTTAGAGTTGATGACATAAGAATTGGTGCCACTTCTCGGAAGGCAATACCTGCTTTAGTTGATCTGCTCAAACCAATTCCAGAACGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTTCTATAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGGGCCCTAGAGGCTCTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGCAGTGCAGAAATTCGAAGACATGAGTCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTCCTGCGTTTAGGAGGAAGAGCTGCAAGATATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAACCCTTCAAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATTCTCTCATCAGATTGCTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACCAGGATTCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCACCATTCAGTTGTCCGTGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTTTATGGTAGGAATTATGTACTTCACGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCAGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTGTGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAACAATGCTAGCATAGCTAAAGGGCCATCGGCTGCTAAAGTAGTTGAACCCCTGTTTATGTTGCTGACAAGAGAAGAATTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTAGTTAATATCTTAGAACATCCGCAGTGTCGTGCTGATTACACATTGACTTCTCACCAAGTTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTACTTTTAGAAGAACACCTTCAGAAAGATCCGGTGACGCAACAGGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAAAGAGCTATAAAGGCCCTGGTTAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAAGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAATCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCTAGTATTCTACAATTTAGTTCTGAATACTACTTGGAAGTTCCTGTTGCTGTTTTGGTTAGGCTGCTTCGATCTGGCTTAGAAAGCACTGTTGTTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGGAACTAGTGCTGAAGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTGGGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTGTTGGAAGTTTTGCTCCACAATGTAAAGATCAGAGAAACAAAAGTTACTAAGTCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTGTTAGCAACTTTGGCTCTTGGTGATCTATTTCAGAATGAGGGTCTTGCTCGGACAAGTGATGCAGTTTCAGCTTGTCGCGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCGGGTGGGGTTCAGGTTATACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGATCTGTGAACGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATTTGGTTACGTCCTTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCTCGCTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGAACGTTGGTGGTGATCATCAAGTGTGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACACTAGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTACATGGTCGTTTGAGAGTCCTCCAAAAGGTCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAGATTGATCGGGTAGTAATGCTTGGAGCAGTATCTGGTGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGACCCTCGAGGAATTTAGAAATTGAATTTCAGTGGTCTAACAAGTGA 6405 0.4292 MERNGDGKAQDSEPLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDNLLTGALKNLSSSTERFWNATIQAGGVDILIKLLTTGQSSTLANVCFLLACMMMEDASVCSKLLTAEATKQLLKLLGPGNDAPVRAEAAGALKALSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTRASDPLVVEQTLLEQFKPGLPFLVQERTIEALASLYSNPILSIKLTNSDAKHLLVGLITMAANEVQDELLKSLLTLCNTECSLWLALQGREGVQLLISLLGLSSEQQQECAVSLLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIVTMIKLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENKDVAAIARDALLSLVALANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHCKRQVDYAVTDCVNRAGTVLALVSFLDFAIDGHSSTSEALEALAMLSRSDVTGAHSKPAWAVLAEFPKSISPIVLSIADSTSVLQDKAIEILSRLCKDQPFVLGDSVVTASGCISSIAKRIINSTSKNVKVKIGGAAVLICAAKLNHQRLVEDLNRSNLCANLVQSLVDMLISSQATLDNQGDDSREVISICRHTKEANDGKSNTGTAIISGANLAVWLLSVLACHDEKSKIAIMEAGAIEVLTDRIADCFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADSDIQDLLELSDEFSLVHYPDQVALERLFRVDDIRIGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLSIDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTREEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAIKALVSIALIWPNEIAKEGGVIEISKVILQSDPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLGSHQCEETAARLLEVLLHNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGSVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKCGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1450 2134 SUPERFAMILY ARM repeat 1563 2010 IPR016024 -
Gso13g1450 2134 Pfam Armadillo/beta-catenin-like repeat 85 115 IPR000225 GO:0005515
Gso13g1450 2134 Pfam Armadillo/beta-catenin-like repeat 506 546 IPR000225 GO:0005515
Gso13g1450 2134 Gene3D - 594 799 IPR011989 -
Gso13g1450 2134 Gene3D - 800 1164 IPR011989 -
Gso13g1450 2134 Pfam C2 domain 2013 2109 IPR000008 -
Gso13g1450 2134 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1179 1223 IPR000225 GO:0005515
Gso13g1450 2134 SUPERFAMILY ARM repeat 1169 1551 IPR016024 -
Gso13g1450 2134 Gene3D - 1165 1281 IPR011989 -
Gso13g1450 2134 ProSiteProfiles C2 domain profile. 1994 2111 IPR000008 -
Gso13g1450 2134 SMART C2_3c 2014 2110 IPR000008 -
Gso13g1450 2134 Gene3D - 397 593 IPR011989 -
Gso13g1450 2134 SUPERFAMILY ARM repeat 1008 1142 IPR016024 -
Gso13g1450 2134 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 2134 - -
Gso13g1450 2134 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2013 2122 IPR035892 -
Gso13g1450 2134 SUPERFAMILY ARM repeat 46 274 IPR016024 -
Gso13g1450 2134 Coils Coil 278 298 - -
Gso13g1450 2134 MobiDBLite consensus disorder prediction 25 39 - -
Gso13g1450 2134 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Gso13g1450 2134 Gene3D - 1301 1635 IPR011989 -
Gso13g1450 2134 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2134 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Gso13g1450 2134 Gene3D - 1636 2012 IPR011989 -
Gso13g1450 2134 Gene3D - 25 391 IPR011989 -
Gso13g1450 2134 CDD C2 2015 2105 - -
Gso13g1450 2134 SUPERFAMILY ARM repeat 595 966 IPR016024 -
Gso13g1450 2134 MobiDBLite consensus disorder prediction 1 39 - -
Gso13g1450 2134 Gene3D C2 domain 2013 2134 IPR035892 -
Gso13g1450 2134 SUPERFAMILY ARM repeat 198 589 IPR016024 -
Gso13g1450 2134 SMART arm_5 1549 1590 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1212 1253 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1167 1210 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 548 588 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 292 341 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1381 1421 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 117 157 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 75 116 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 714 752 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1464 1504 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1422 1462 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1713 1752 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1294 1335 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 249 290 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 462 504 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 1840 1880 IPR000225 GO:0005515
Gso13g1450 2134 SMART arm_5 506 546 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1450 Gso-Chr13 30005136 30015517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1450 479 601 U-box Gene Family AT2G23140 41.935 3.89e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1450 - - gmx:100816765 3959.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0173 18 1492659 1503203 Gso13g1450 13 30005136 30015517 GST
Gso5g1544 5 38853815 38864930 Gso13g1450 13 30005136 30015517 PCT
Gso8g1176 8 10740829 10752130 Gso13g1450 13 30005136 30015517 PCT