Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1449 ATGAGCGGTGGCCGGAGACGTGACGGGAGAGACAGCAGAGCATTGAAGAAGCGGAAGCTGAACCGCACTCCCGAGGAAGAGCTCGAGGCAAAATTTGGATTCGATCTCTTCACAGAAGGCGAAAAGCGTCTCGGATGGTTACTGACTTATGCATCCTCTTCTGTTGACGATGAAGACAGTTACAAAGTATACAGTTGCGTTGATCTCTACTTTGTTGCGCAGGATGGCTCTTCATTCAAGACAAAATTCAGATTTCGGCCTTATTTCTATGTAGCTACAAAGGATAAAATGGAGATTGATGTTGAAGCATACCTGAAAAGACGTTATGAAGGTCAGATTGCAGATGTTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGGATGTGAAGAGAGACCTGATGCCTACTGTTGAAAGAAATAAGGTCAAGTCTGATGCTGCAGAAGCCTTTTTGTCTATGTCAACAGAAAGAAGAGAACAAAGACCTCAGGATTTTCTAGATTGCATAACCGATCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGCCCACTAATAATGGGGTTACACTTGAGAAGAAGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGACTATGATTTAATTATGATGATTTCATACATGGTAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTCGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGATGTGAAACCTGGTATCTATGTGACATATAACGGCGATTTCTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCATGGGTTCAAAATGAGTGATGAATTGGGATTCAAATGCGATACGAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGCAGCCAAGGCCTGAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCATTGGAGGTGAACCCTGAGGACATGGTTTGCTTTGCAAAGGAAAAGCCACAGATGATGGCCTCCTATTCTGTTTCTGACGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTCTGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCTAATGTTATATGTCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGTCATGTGGAGTGTCTTGAAAGTGGTGTATTCAGATCTGATATTCCATCTAGTTTTAAACTCGAGCCATCCGCCTATCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGTAAGATGGATTTGGAATTTGTTTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAATTACGAGAAGCACCAATACGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCACATAATTTTAACAAACCGACTTCAGCCACCGTCAATTGTTACGGAGGAAGTTTGCACTGCATGTGATTTTAATCGTCCCGGAAAGACTTGCCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCTAAGAAAAGTGACTATTATGCTTTAAAGACACAGATTGAATCAGAGTTTGTTGATGATTCTGAGAAGAACAACAGAGCCTTATCTCACTATTCTGAGAAATCATCAAAATCTTTTCTTGACCTTCCCAAGGCAGAGCAACAATCAAGACTGAAAGAGCGTTTAAAGAAATATTGCCAGAAGGCATATAAACGGGTACTTGACAAACCTGTTACCGAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAACTGTCAGAGGCCAAGGCTAGTGGAAATTCTATAAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATACGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATCATTCAGAATGCTCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAGAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACTCAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACGTATACAACTCACAGTGAATGCTCTATCGAATTTGAGGTGGATGGACCGTACAAGGCAATGATCCTTCCCGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCCGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAACGCAGAGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACTTTAGAGGAATGCTATTCAGCTGTTGCTTCGGTGGCAAATGGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTCTGCAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTGGCTGACTTTCTTGGCGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGCACGCCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGACATTCGATCCATAATTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTGGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGGAAATTAGTTGATGCCTTTAAATCAATGAATAGGAATGAGCACTCAAAAAAGCATAATGACTCAAATCGTGTCCCTCTTGTGATTGATGATGATATTGTTAATGAGTTGGAGGACTTTGGAAACAAGGACAGGAGTTCTACATGCAGGCCTAGACCAATTATACGGCATTATGAAGCTAATAATGAACGACATTCAGGGAAGCTCAATGATCAAGATGTAGAGCAACAGCATAATAAACCATTACAACAAAAAGTTGACAAAAATGTAGATTATGAAGGATGGCTTCAAATAAAGAAGCAAACGTGGAAAGATATTCTGGAAAGGAGAAAGAAGCGAAGATTGGAGAATTCAAAGAAATCTGACCGTGTAAATGGTGTTCTTCGACAAATGAATGGTAAGGGGAATCAGGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACAAAGCGTCACTGGCAGATAATACAACTAGTTCCCAGTTCACTGATAGGCCACTTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCAGACATTACTGAAGAATTTATGGGTAAACGTGTTAACAAGACTCTTCCTCATGGACGGCATAGTTATAACTTGTATGAGGTCTCAATTAATGAAATTCAATATGGGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAGTATATGAAACTAAGGTGCCACTGGAATTTAATGCAATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTGAGTGAATTGCACATGAAGACCACAGTTGAATGCGCTTATCTTGAACAATCTATATCCTTCTTTTATTTTTACCATAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATTAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCGACTTTTCTTGAAAGACAATTTCACGATGCTTGCCAGTCTTTGTCTATTGAGTCACCTCCGAGGAATGGCATTAATTTCAAGTTGGACTATGTTGCACATGTCAAGGATGCTGAAGCAGTGATGCAAAGAGCAATAAATGGTCACAGTCATGGGAGGGAAAATCACATGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAATTAGTAAAATTGGGCATCCAAGTTCTGGATAATTTTCCATGCCTGAGTGTTCCTTATAATGCACGTGATAGTCAGTACCAGATTCTTGGCTGGCAACAAGTTGCTGCTAAAACTGGAATGCAACGTTGTGCTGCATCAGTCCAATGGCTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGTTGGGGAACTTTGAACTTTACTGGCTTATATTTATTGCGGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTACTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGAATTAATGGTGAACAGAACTGTTTTGTGGATGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGCTAAAGATACACCACCTGGCTGTAAATGCTCTTCTCAAGTACAACCTAGTTAATGAAATGGAAGGAGGCACTCTATTGGGATTTGGTCATGAACTTGATTCTGGAGCATTTTCCACAAATGATCAAAATGGTTTTGATGAGTCTACCTCATGTGCACAAGCCTTTCGAGTCCTTAAACAGTTGATCCAGCGGTGCCTAGCAGATGCAGTTACATCCGGAAATGTTTATGCTGATTCAATTTTGCAACATCTGTATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCACCAGTTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACGATTGTATTTGCAAACTTTACAAAGATTGTTATAGACACCGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGTGATAGTTTGTTAAGAACTATACAATCAAGAGATCTATTTGAATGGGTTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAACAAAATCTGATGAAGCTCTAAATGATGAATCTCAAGTGGACATTATATCTAGCTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAGACCATTTTGTTTTCATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCAAAAAAACAAGCACAAATCAGGGCCTCATTGCAGAATGGTGACTCCTGTACCCCATCAATTAACATTGGAGCTGCAGAGGCTTTTGAATCAGAAGTAACAGAATTTACCAAAGACCAGATTAGCTCTTATTTCACACACAAACTGCTAGGAATTGTTCACGATATTGGTCTTCATATGAAGGGTATGAACAGATCAGAAAACAACCAGAGTACATCAGGCCTTCCTCAACTTACGGGTGATGTCCATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTTTGTGCTGTCCTCGCCCTTGACCACAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAAAAATTTGCTCAAATATGTTGATGTTAAGGAGTTTGCTCCAGAAGCTAAGTTTCATGGTCCTTGTCATTCCTTCGTCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGATTTGTGCCGTGATTCGGCTTTATTAACTGAGGAGTGGCGTTGTGCAGTGCCACAGTGTGGCCAGCCTTATGATCGTGAGGTGATGGAAAATGCTCTTCTTCAAACTGTAAGACAAAGAGAACGGCTATACCAGCTGCAAGATCTGGTGTGTACCAGGTGCCATCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGTATGTGCAGGCTCATTTAGGTGCAAGGAAGATGCAAGTGAATTTCGTGAAAAAATGCAAATTTTCTTGAACATAGCTTCTCATCAGAAATTCCAACTTCTCGAAGAATGCACCTCTTGGATTTTAGAACTTAGATAG 6621 0.4025 MSGGRRRDGRDSRALKKRKLNRTPEEELEAKFGFDLFTEGEKRLGWLLTYASSSVDDEDSYKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEIDVEAYLKRRYEGQIADVEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKVKSDAAEAFLSMSTERREQRPQDFLDCITDLREYDVPYHVRFAIDNDIRCGQWYDVGVPTNNGVTLEKKTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQDVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDELGFKCDTNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVCFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFKLEPSAYQQLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLREAPIREECPLIYHLDVAAMYHIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSEKNNRALSHYSEKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTRDPKKKFTISYPCVMLNVDVAINNSNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANGWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGLQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVDIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDAFKSMNRNEHSKKHNDSNRVPLVIDDDIVNELEDFGNKDRSSTCRPRPIIRHYEANNERHSGKLNDQDVEQQHNKPLQQKVDKNVDYEGWLQIKKQTWKDILERRKKRRLENSKKSDRVNGVLRQMNGKGNQGRSHVSSYLKRLEVDLTKRHWQIIQLVPSSLIGHFFAWVVVDGSMHKIPVSVPRVFYLNSRSDITEEFMGKRVNKTLPHGRHSYNLYEVSINEIQYGEASKKLAALLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTVECAYLEQSISFFYFYHSISEGRAIYVGYFPALKAITVVVVNPYQNKDLSPTFLERQFHDACQSLSIESPPRNGINFKLDYVAHVKDAEAVMQRAINGHSHGRENHMPMVAVIECPNVQLVKLGIQVLDNFPCLSVPYNARDSQYQILGWQQVAAKTGMQRCAASVQWLNQRIALSRYAHVPLGNFELYWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGINGEQNCFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLGFGHELDSGAFSTNDQNGFDESTSCAQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIVIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWVELEPLQFWCSLLFMDQYNYGGIPTKSDEALNDESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAKKQAQIRASLQNGDSCTPSINIGAAEAFESEVTEFTKDQISSYFTHKLLGIVHDIGLHMKGMNRSENNQSTSGLPQLTGDVHRGDASLEFIKHVCAVLALDHSVQHEVLVLRKNLLKYVDVKEFAPEAKFHGPCHSFVLSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYQLQDLVCTRCHQVKAAHLAEQCVCAGSFRCKEDASEFREKMQIFLNIASHQKFQLLEECTSWILELR* 2207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1449 2206 SUPERFAMILY Ribonuclease H-like 63 490 IPR012337 -
Gso13g1449 2206 MobiDBLite consensus disorder prediction 1 25 - -
Gso13g1449 2206 Pfam Domain of unknown function (DUF1744) 1523 1893 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gso13g1449 2206 Gene3D Palm domain of DNA polymerase 764 946 IPR023211 -
Gso13g1449 2206 Pfam DNA polymerase family B, exonuclease domain 73 400 IPR006133 -
Gso13g1449 2206 CDD POLBc_epsilon 503 1131 - -
Gso13g1449 2206 Gene3D DNA Polymerase, chain B, domain 1 49 225 - -
Gso13g1449 2206 SUPERFAMILY DNA/RNA polymerases 486 1124 IPR043502 -
Gso13g1449 2206 SMART polmehr3 239 851 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso13g1449 2206 Gene3D - 238 468 IPR036397 GO:0003676
Gso13g1449 2206 Gene3D - 950 1134 IPR042087 -
Gso13g1449 2206 CDD DNA_polB_epsilon_exo 240 443 - -
Gso13g1449 2206 SMART DUF1744_2 1507 1893 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gso13g1449 2206 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 29 2203 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Gso13g1449 2206 Pfam DNA polymerase family B 767 1079 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1449 Gso-Chr13 29969476 29997909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1449 3 2203 Core DNA Replication Machinery Family AT2G27120 66.773 0.0 2989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1449 K02324 - gmx:100778115 4428.62