Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1442 ATGAAACCTCTCTCCAAGCTCTTGAACAAGTTTTGTGGGAAAATGATAATGCTATTAGCATCCCTGCTAATAGAACTCATAATTCTCATTCAAAAACTAAGGGAATCACGTCCAATCAGCACCCGCCAATACCTCAAACTCATCGAGAAGAAGAACCCCACCATTTGCTACACCAAAAGATTGAACTTGAAGGCAGAGCACGCTGCTACAGCTACTGAGTGTAGGGTATGTCTGTCCGAATTCGAGGAAGGGGAGAAGGTGAGGAAACTGAAATGCCAACACACCTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAGTATTGGGCAACGTGCCCACTTTGTCGGAAACAGGTGCTGCCAGATGATGTTGTGTTCAAGCACCGTCTGCATCAGAATCAAGCAGAGGCTGCTTCTAATAATGGGAATGATGACAATCTTCTCTATCTTTTTTCAGCATTTCGTGGTGGCAACACTTAA 480 0.4417 MKPLSKLLNKFCGKMIMLLASLLIELIILIQKLRESRPISTRQYLKLIEKKNPTICYTKRLNLKAEHAATATECRVCLSEFEEGEKVRKLKCQHTFHRDCLDKWLQQYWATCPLCRKQVLPDDVVFKHRLHQNQAEAASNNGNDDNLLYLFSAFRGGNT* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1442 159 SUPERFAMILY RING/U-box 56 122 - -
Gso13g1442 159 SMART ring_2 74 115 IPR001841 -
Gso13g1442 159 PANTHER - 1 159 - -
Gso13g1442 159 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Gso13g1442 159 CDD mRING-H2-C3H2C2D_ZSWM2 73 116 - -
Gso13g1442 159 Pfam Ring finger domain 73 116 IPR001841 -
Gso13g1442 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 121 IPR013083 -
Gso13g1442 159 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1442 Gso-Chr13 29908110 29908935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1442 72 127 C3H Transcription Factor Family AT1G15100 55.357 6.63e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1442 K16282 - gmx:102661897 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0178 18 1547178 1548158 Gso13g1442 13 29908110 29908935 GST
Gso5g1548 5 38898790 38899610 Gso13g1442 13 29908110 29908935 PCT
Gso8g1180 8 10782044 10782718 Gso13g1442 13 29908110 29908935 PCT