Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1440 ATGGCCGATCACTCAGATTCTTCTCCTCTCGTTCCTCCCCTTCCCCTCACCGACCCTTCTGAGATCGACCTCGAAGCTGGTCCCTCCGAACAAATCCAGTGCCGAATTTGTCTCGAAACTGACGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTGCATCGAGAATGTTTGGATCATTGGCGAGCAATTAAGGAAGGGTTTGCCTTTGCTCACTGCACTACGTGCAAGGCTCCTTATCATTTGCGTGTCCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGATTTTTTGTCACCAGAGACATGTTGTTTATTTTTCTGTCTGTCCAGCTTGTCATTGCTTCACTGTCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTGTTTTTCGCCTTGCTTGGCCTCTCTGGGTGCTTCATTACCTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGTTTGGGGGGTGCTGGGGAAGCTGGGCTACCACTATTATTCATTATGGCTTTGATTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGTGTATTGGTTGCTACCATGGTAGGTCAACGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGCTGATGGAGAGCTGACTGGATCGGATTGGTCTCCCCCGGCTCTCCCACCCGAACATGTTCAGCAGTTGAAAACATTGGGCCTACTATGA 972 0.4516 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDMLFIFLSVQLVIASLSYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDADGELTGSDWSPPALPPEHVQQLKTLGLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1440 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Gso13g1440 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Gso13g1440 323 SUPERFAMILY RING/U-box 29 86 - -
Gso13g1440 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Gso13g1440 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Gso13g1440 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Gso13g1440 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Gso13g1440 323 SMART ringv_2 33 82 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1440 Gso-Chr13 29892818 29899712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1440 1 323 C3H Transcription Factor Family AT2G22120 85.185 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1440 - - gmx:100820355 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0180 18 1560659 1565989 Gso13g1440 13 29892818 29899712 GST
Gso5g1549 5 38910775 38915071 Gso13g1440 13 29892818 29899712 PCT