Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1439 ATGAATTCAGCATCCCCGCAGTTTGTTTCCCCGAGAAGTATGAGTGTGTACGATCCGATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGAAATTTAAGTGCAGCCATGCCTTTAATTGATGAGGCAGACATGAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAGAACCTAATAAGTATGACCAAGAAGCTAGCAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGATTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAACTTGAACGTGCAAGACAGCAGGGAATGTATATAGGTGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGACACTGGGTGAATGAGCAAAATAGACAAATCACAGAACTGAGAAATGCTTTAAATGCTCATATTGGTGACGTAGAGCTCAGGATTTTAGTAGATGGTATGATGAGCCACTATGCCGAAATGTTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTATGTTATGTCCGGTATGTGGAAAACAACAGCTGAAAGATTTTTCCTGTGGATTGGAGGCTTTCACCCCTCGGAGCTTCTAAAGGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAGGTATGGACAAACTCCGCCAAACACTTGCTGATAGTGTAGCAGCTGGGCAGTTCATGGAAGGAACGTATATTCCACAGATGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACAATCCGTCAGGCGGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAATAGACCCCGGGAACCTGCTTAG 1089 0.4463 MNSASPQFVSPRSMSVYDPIHQISMWGEGFKSNGNLSAAMPLIDEADMKFDSQSEDASHGILGEPNKYDQEASKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQNRQITELRNALNAHIGDVELRILVDGMMSHYAEMFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFHPSELLKVLGPLIEPLTEQQRLNIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTSAMEKLEDLVSFVKQADHLRQETLEQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1439 362 Coils Coil 97 124 - -
Gso13g1439 362 Coils Coil 158 178 - -
Gso13g1439 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Gso13g1439 362 CDD bZIP_HBP1b-like 78 130 - -
Gso13g1439 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Gso13g1439 362 Gene3D - 77 126 - -
Gso13g1439 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Gso13g1439 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Gso13g1439 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Gso13g1439 362 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
Gso13g1439 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Gso13g1439 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Gso13g1439 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Gso13g1439 362 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1439 Gso-Chr13 29873797 29879602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1439 1 362 Calmodulin-binding Proteins AT5G10030 69.231 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso13g1439 DOG1 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1439 K14431 - gmx:548066 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0181 18 1580131 1586039 Gso13g1439 13 29873797 29879602 GST
Gso5g1551 5 38932560 38940318 Gso13g1439 13 29873797 29879602 PCT
Gso8g1182 8 10810738 10817370 Gso13g1439 13 29873797 29879602 PCT