Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1431 ATGTTTGAGGGTTTGTGCTTGAAAATGGAGAAAAGAGGGAATGTGTTGATGGAGAAGTATGAGTTTGGGAAGCTATTAGGTCAAGGAAACTTTGCGAAGGTTTACCATGCAAGGGACGTCAGAACTGGTGAGAGTGTTGCCGTTAAGGTGATTGACAAGGAGAAAATTCTAAAAATTGGACTAGTGGATCAGACGAAGCGAGAGATATCGATTATGAGACTGGTTAAACATCCCAATGTTTTGCAGCTTTATGAGGTCTTGGCCACCAAGACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGCGAACTTTTCAACAAGATAGCCAAAGGTAGACTCACTGAGGACAAGGCAAGGAAGTACTTTCAACAATTGGTCAGTGCTGTTGATTTTTGCCACAGCAGGGGTGTTTATCACAGAGATTTGAAGCCGGAGAACTTGCTTTTGGATGAGAATGGAGTTCTCAAGGTAGCGGATTTTGGATTAAGTGCACTTGTTGAATCTCACCGTCAAAAAGACATGCTGCATACAATTTGTGGAACTCCTGCATATGTGGCTCCTGAGGTTATAAGTAGAAGGGGCTATGATGGAACAAAAGCCGATGTATGGTCTTGTGGAGTGATCTTATTTGTTCTTTTGGCTGGTCATTTGCCATTCTATGATTTGAATCTTATGTCACTGTATAACAAAATAGGCAAGGCCGATTACAAATGTCCAAACTGGTTTCCGTTTGAAGTGCGCAGACTGTTAGCGAAAATCCTTGACCCCAACCCAAATACCAGGATATCCATGGCAAAACTTATGGAAAATTCGTGGTTCAGAAAAGGATTCAAACCCAAATCTGGTCAAGTGAAAAGAGAGGCTGTTAATGTGGCTTTAGTTGATTCTGATCAAGTTTTTTGCTTGTGTGAGAATACAAGTGCTGCTGTTGTTGAGGCAGAGCAAGCATTGGTTAAACCTTCACAGTTTAATGCTTTCAATATAATTTCTCTGTCTGCTGGGCTTGACTTGTCTGGCCTTTTTGCTGGCAATGTTGAACTGGATGATACCAAATTTACATTTATGAGCTCTGCCTCATCCATCATGTCTACAATGGAGGATATTGCTCGCGTTTTGAGTATGGAGATAATTAAGAAGGATGGAGGGTTGCTGAAATTGGAGAGATCCAGGGAAGGTAGAAAAGGACCACTTTCCATTGATGCTGAAATATTTGAGGTTGCCCCATCTTTCCATTTGGTCGAGTTGAAGAAGTCCTGCGGTGATGCATTAGAATACCAGAAGATATTGAAGGAAGACTTAAGACCAGCTCTAAAAGATATTGTCGGTGTTTGGCAAGGTGAGCAGCATCTGCACTAG 1359 0.4172 MFEGLCLKMEKRGNVLMEKYEFGKLLGQGNFAKVYHARDVRTGESVAVKVIDKEKILKIGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNKIAKGRLTEDKARKYFQQLVSAVDFCHSRGVYHRDLKPENLLLDENGVLKVADFGLSALVESHRQKDMLHTICGTPAYVAPEVISRRGYDGTKADVWSCGVILFVLLAGHLPFYDLNLMSLYNKIGKADYKCPNWFPFEVRRLLAKILDPNPNTRISMAKLMENSWFRKGFKPKSGQVKREAVNVALVDSDQVFCLCENTSAAVVEAEQALVKPSQFNAFNIISLSAGLDLSGLFAGNVELDDTKFTFMSSASSIMSTMEDIARVLSMEIIKKDGGLLKLERSREGRKGPLSIDAEIFEVAPSFHLVELKKSCGDALEYQKILKEDLRPALKDIVGVWQGEQHLH* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1431 452 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1431 452 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Gso13g1431 452 Gene3D Transferase(Phosphotransferase) domain 1 100 302 - -
Gso13g1431 452 PANTHER - 10 450 - -
Gso13g1431 452 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1431 452 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1431 452 Gene3D Kinase associated domain 1, KA1 319 445 - -
Gso13g1431 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gso13g1431 452 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 450 - -
Gso13g1431 452 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gso13g1431 452 SUPERFAMILY Protein kinase-like (PK-like) 16 299 IPR011009 -
Gso13g1431 452 Gene3D Phosphorylase Kinase; domain 1 9 99 - -
Gso13g1431 452 CDD CIPK_C 325 439 - -
Gso13g1431 452 Pfam NAF domain 321 378 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1431 Gso-Chr13 29793494 29797471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1431 9 449 CBL-interacting serine-threonine protein kinases AT5G58380 59.292 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso13g1431 Pkinase 8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1431 K07198 - gmx:100816254 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0187 18 1634543 1639179 Gso13g1431 13 29793494 29797471 GST