Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1427 ATGGATTGTTGTGTGTGTACAACTATGCCATTGATATTAAGGCCTCCGAGGAATACAATATGTGGGGCTTGTTACGAAGGAGTTAGGAGCATAATCAACATGATGAGCAACATTGAAAGTGAGAAAGTAAAGGCAATGGCTAATCCAAATCAAAATAGTTCTCCAGTTTCGCGGCGAAATTCGAGTAAGATACTTGATGATTGTATTAGATGGTGTTCAGAACAGACGGAGCAGTTTAATCAACAAAAAGAAGACATGGTTTTCCTCAGAGGCTTTGTTGCAGCCTTCAAAGCACAGATTCACACGGATATATTGGTCAGTCCAGGCAGGAACGGTCCACCTATACCTGCACATAAGTCCGTTTTGGCAGCAAGATCAGAAATATTTAAGAACATGCTAGAGTGCGATGAATGCAAGGCAGCACCAAGTAACGCCATAACTATACCCGATTTGAACCATGAAGAACTAGAGTCTCTCCTTGAGTTTCTGTACAGTGGGACATTGAATGTGGAAAAATTGGAGAAACATGTCTACGCTTTGTCACAAGCAGCTGATAAGTATGTGATTCCACATTTGCTGAAACACTGCGAACGATATCTGCTGAGTTCACTAAGCACTTCCAATGCTCTTGAGACACTAGAAATTGCGGATACTTGTTCCAACCACAACTTGAAGGAGACAACCTTGAACTTCTTAGTTAAAAACATTGAGCACATGGTGTCCTCACCTAAATTTGAAGCTTTTGTCCATAGGAGCCCACATCTTACTGTGCAACTAGTTACAAGGGCGTTTGTGAATGGTGCCAAATAA 810 0.4148 MDCCVCTTMPLILRPPRNTICGACYEGVRSIINMMSNIESEKVKAMANPNQNSSPVSRRNSSKILDDCIRWCSEQTEQFNQQKEDMVFLRGFVAAFKAQIHTDILVSPGRNGPPIPAHKSVLAARSEIFKNMLECDECKAAPSNAITIPDLNHEELESLLEFLYSGTLNVEKLEKHVYALSQAADKYVIPHLLKHCERYLLSSLSTSNALETLEIADTCSNHNLKETTLNFLVKNIEHMVSSPKFEAFVHRSPHLTVQLVTRAFVNGAK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1427 269 SMART BTB_4 102 204 IPR000210 GO:0005515
Gso13g1427 269 Gene3D Potassium Channel Kv1.1; Chain A 70 205 IPR011333 -
Gso13g1427 269 Gene3D - 206 267 - -
Gso13g1427 269 ProSiteProfiles BTB domain profile. 102 172 IPR000210 GO:0005515
Gso13g1427 269 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 1 268 IPR044784 -
Gso13g1427 269 SUPERFAMILY POZ domain 88 203 IPR011333 -
Gso13g1427 269 Pfam BTB/POZ domain 101 203 IPR000210 GO:0005515
Gso13g1427 269 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 268 - -
Gso13g1427 269 CDD BACK 205 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1427 Gso-Chr13 29761714 29764014 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso13g1427 BTB 2.2e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1427 K10523 - gmx:100814664 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0192 18 1666989 1668852 Gso13g1427 13 29761714 29764014 GST