Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1413 ATGTCATCACGTGCTCCTCCTCACTCTTCCTCTCTCTCCTCACTACAAAAACCATTCTTCAACTTACAACACACAGTGTTTTTTTGTTCCACTAAATCAAAATCTCTCATTCTCATTACCTTTATTCTTTTGATTTTTTTCGTTATGTTACTAGTGGAGAAAACCAACCTCACTTCACAATGCTTCAACCGTATTTCTGATAAGAAGAAAGAAAGATGGAAGACACACAACAACAACCCATGGCGTGTTTTGTTTCTCTTATGTATGTGGAGTCTTGTTGTGCTCCCTTCATGCGTGAGACCAGCTTTGTGTGAAGATGAAAGTTGGGACGGAGTGGTTGTGACAGCATCAAACCTCTTAGCACTTCAAGCTTTCAAGCAAGAGTTGGTGGACCCAGAAGGGTTCTTGCGGAGCTGGAACGACAGTGGCTATGGTGCTTGTTCAGGAGGTTGGGTTGGAATCAAGTGTGCTCAGGGACAGGTTATCGTGATCCAGCTTCCTTGGAAGGGTTTGAAGGGTCGAATCACTGACAAAATTGGCCAACTTCAAGGCCTTAGGAAGCTTAGTCTTCATGATAACCAAATTGGTGGTTCAATCCCTTCAACTTTGGGACTTCTTCCCAACCTTAGAGGGGTTCAGTTATTCAACAATAGGTTAACTGGTTCCATCCCTTCTTCTTTAGGTTTCTGTCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAGCAATCCCTTATAGCCTTGCCAATTCCACCAAGCTTTATTGGCTTAACTTGAGTTTCAACTCCTTCTCTGGTACTTTACCAACTAGCCTAACTCACTCATTTTCTCTCACTTTCCTTTCTCTTCAAAATAATAATCTTTCTGGCAACCTTCCTAACTCTTGGGGTGGGAATCCCAAGAGTGGCTTCTTTAGGCTCCAAAATTTGATCCTAGATCATAATTTTTTCACTGGTAATGTTCCTGCTTCTCTGGGTAGCTTAAGAGAGCTCAGTGAGATTTCCCTTAGTCATAATAAGTTTAGTGGAGCTATTCCAAATGAAATAGGAACTCTTTCTAGGCTTAAGACACTAGACATTTCTAATAATGCCTTCAATGGGAGCTTGCCTGTTACCCTCTCTAATTTATCCTCACTTACATTGCTGAATGCAGAGAACAACCTCCTTGAAAATCAAATCCCTGAAAGGTTAGGTACATTGCGTAATCTTTCTGTTCTGATTTTGAGTAGGAACCAATTTAGTGGACATATTCCTTCAAGCATTGCAAACATTTCCATGCTTAGGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGAAAGTCAACGTAGTCTTGATTTCTTCAATGTTTCTTACAATAGCCTTTCAGGTTCTGTTCCACTTCTACTTGCCAAGAAATTTAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGGTATAGCCCTTCAACCCCATGTCTTTCACAAGCTCCATCACAAGGAGTCATTGCCCCAACTCCTGAAGTACTGTCAGAACAGCACCATCGTAGGAACCTAAGTACCAAAGACATAATTCTCATAGTAGCAGGAGTTCTCCTAGTAGTCCTGATTATACTTTGTTGCATCCTGCTTTTCTGCTTGATCAGAAAGAGATCAACATCGAAGGCTGAGAACGGACAAGCCACGGGGAGAGCAGCCGCTGGAAGGACAGAAAAAGGAGTCCCTCCAGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCATTGGCTTTTACAGCCGATGATCTCTTGTGTGCAACTGCTGAGATCATGGGAAAGAGCACCTATGGAACAGTGTATAAGGCTATTTTGGAGGATGGAAGCCAAGTTGCAGTGAAGAGATTGAGGGAAAAGATCACTAAAGGTCACAGAGAATTTGAATCAGAAGTCAGTGTTCTAGGAAAAGTTAGACACCCCAATGTCTTGGCTCTGAGGGCCTATTACTTGGGACCCAAAGGGGAAAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAGGTCTTGCTTCTTTCCTACATGGTGGTGGAACTGAAACCTTCATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTTTGTCTTCATTCCCTGGAGAACATTATACATGGGAACCTCACATCCAGCAATGTGTTGCTTGATGAGAACACAAATGCTAAAATTGCAGATTTTGGTCTTTCTCGGTTGATGTCAACTGCTGCTAACTCCAACGTGATAGCTACTGCTGGAGCATTGGGATACCGGGCACCAGAGCTCTCAAAGCTCAAGAAAGCAAACACTAAAACTGATATATACAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGACTAGATTTGCCTCAGTGGGTTGCCTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGCAGACATGATGAGAGATGCATCGACAGTTGGCGATGAGTTGCTGAACACGTTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGTACGCCCGGAAGTTCATCAAGTGCTCCAGCAGCTAGAAGAGATTAGACCAGAGAGATCAGTCACAGCCAGTCCTGGGGACGATACCATATAG 2694 0.4332 MSSRAPPHSSSLSSLQKPFFNLQHTVFFCSTKSKSLILITFILLIFFVMLLVEKTNLTSQCFNRISDKKKERWKTHNNNPWRVLFLLCMWSLVVLPSCVRPALCEDESWDGVVVTASNLLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGRITDKIGQLQGLRKLSLHDNQIGGSIPSTLGLLPNLRGVQLFNNRLTGSIPSSLGFCPLLQSLDLSNNLLTGAIPYSLANSTKLYWLNLSFNSFSGTLPTSLTHSFSLTFLSLQNNNLSGNLPNSWGGNPKSGFFRLQNLILDHNFFTGNVPASLGSLRELSEISLSHNKFSGAIPNEIGTLSRLKTLDISNNAFNGSLPVTLSNLSSLTLLNAENNLLENQIPERLGTLRNLSVLILSRNQFSGHIPSSIANISMLRQLDLSLNNLSGEIPVSFESQRSLDFFNVSYNSLSGSVPLLLAKKFNSSSFVGNIQLCGYSPSTPCLSQAPSQGVIAPTPEVLSEQHHRRNLSTKDIILIVAGVLLVVLIILCCILLFCLIRKRSTSKAENGQATGRAAAGRTEKGVPPVAAGDVEAGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKITKGHREFESEVSVLGKVRHPNVLALRAYYLGPKGEKLLVFDYMPKGGLASFLHGGGTETFIDWPTRMKIAQDMARGLFCLHSLENIIHGNLTSSNVLLDENTNAKIADFGLSRLMSTAANSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVILLELLTRKSPGVSMNGLDLPQWVASIVKEEWTNEVFDADMMRDASTVGDELLNTLKLALHCVDPSPSVRPEVHQVLQQLEEIRPERSVTASPGDDTI* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1413 897 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 66 890 - -
Gso13g1413 897 Pfam Leucine rich repeat N-terminal domain 119 156 IPR013210 -
Gso13g1413 897 Gene3D Transferase(Phosphotransferase) domain 1 689 894 - -
Gso13g1413 897 Gene3D Ribonuclease Inhibitor 304 499 IPR032675 -
Gso13g1413 897 SUPERFAMILY L domain-like 155 488 - -
Gso13g1413 897 Gene3D Phosphorylase Kinase; domain 1 617 688 - -
Gso13g1413 897 CDD STKc_IRAK 617 882 - -
Gso13g1413 897 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 66 890 - -
Gso13g1413 897 SUPERFAMILY Protein kinase-like (PK-like) 615 884 IPR011009 -
Gso13g1413 897 Gene3D Ribonuclease Inhibitor 232 303 IPR032675 -
Gso13g1413 897 Gene3D Ribonuclease Inhibitor 117 231 IPR032675 -
Gso13g1413 897 Pfam Protein tyrosine and serine/threonine kinase 614 879 IPR001245 GO:0004672|GO:0006468
Gso13g1413 897 ProSiteProfiles Protein kinase domain profile. 611 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1413 897 Pfam Leucine rich repeat 309 367 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1413 Gso-Chr13 29647787 29651237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1413 107 884 Receptor kinase-like Gene Family AT3G51740 62.996 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso13g1413 PK_Tyr_Ser-Thr 2.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1413 - - gmx:100810353 1542.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0205 18 1761006 1764215 Gso13g1413 13 29647787 29651237 GST
Gso13g1413 13 29647787 29651237 Gso14g0471 14 4457781 4461003 PCT
Gso14g0471 14 4457781 4461003 Gso13g1413 13 29647787 29651237 PCT