Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1408 ATGGATTCCGAGTTCCCCGACAAAGCGTTAACGAGCGTGCGTTTTTCCGACCTGAATCCGCCACTCTCTGAACCGGTTCTCCAAGCCCTATCACACTCCGGCTTCGACTTCTGCACCCCCGTCCAAGCCGCCACCATTCCCTTGCTCTGCAGTTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGCAAAACCCTAGCTTTTGTCGTTCCTCTCGTCGAGATTCTACGTCGCTCCTCTTCTCATCCCAAGCCTCACAAGGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATATCATGTTGCACAGTCCTTCATTTCAACATTGATGAATGTTAAGTCCATGCTCCTCGTTGGTGGAGCAGAAGTAAAAACAGACATAAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATTGGCACGCCCGGACGGCTATATGACATAATGAATCGGATGGATGTTTTGGATCTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCTCTTGCCTAAGCTTCGGAGAACTGGTCTGTTCTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTGCTAAGGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGAAAAGGGTCCCGCATCATCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGAAGATAAGAAGCCATCACAGCTACTAGATATCCTTATTAAGAATCGCTCAAAAAAAATTATAATATATTTCATGACTTGTGCATGCGTTGATTATTGGGGAGCTGTCCTTCCTTGTCTTTCTGTTTTGAAAGGCTTCTCCTTGATTCCCCTACATGGGAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACAACCCTTTCAAATGGAATTCTTCTATGTACAGATGTTGCTGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAACGTTTTCATACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAGATTCGTTCTGCCGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAATTAAGGCTTTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGTTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCTACGGGATTTGGCTTATTACAACTTCCTTCAATGCCGGAGGTAAAACACCACTCACTTTCCACGGATGGATTTGAGCCAGTTGAAGATATCAATTTGGTGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAGAGAGCCAAAACCTCAAAAACCGAAGAAAACCCCAATTGCACCCACTGCCACGCGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAATGGAAGACGAGGAAGAGTTGATGCAGGAATACCGCTTATTGAAGAAATTGAAGAAAGGGACCATAGATGAGAACGAATATGCCAAGTTGACAGGTGCGCAAGGCGATGAGATCATTTTCCCTCAAGCACTGTTGGTCGCAGAAAATGAACCACCCTCAGGTTTGGCACATAGTAATGGTTGGAATCCTTTACCCATTTTCTTGAGCATCATATCAAACTCATGGCAACCTTTGTCATACACGGTCACTGAAATTGCCTATCTAATATCTTCACCTTCTTTAAAGAACTCTAAGAGGATGTCTTCGAACCCTTGCACGGGCAAGCATAGGTTCCACTTGTAA 1998 0.4394 MDSEFPDKALTSVRFSDLNPPLSEPVLQALSHSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSHPKPHKVLGIIISPTRELSTQIYHVAQSFISTLMNVKSMLLVGGAEVKTDIKKIEEEGANILIGTPGRLYDIMNRMDVLDLKNLEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAIEELAKAGLRNPVRVEVRAETKSEKGPASSKQPESSKTPSGLHIEYLECEEDKKPSQLLDILIKNRSKKIIIYFMTCACVDYWGAVLPCLSVLKGFSLIPLHGKMKQSAREKALASFTTLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERICSDDATDVVPQIRSAAKKDRDVMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLATGFGLLQLPSMPEVKHHSLSTDGFEPVEDINLVDIKYRDKSREKQRKKNLQAKKEAKEREPKPQKPKKTPIAPTATRKKTARQRRAQQTMEDEEELMQEYRLLKKLKKGTIDENEYAKLTGAQGDEIIFPQALLVAENEPPSGLAHSNGWNPLPIFLSIISNSWQPLSYTVTEIAYLISSPSLKNSKRMSSNPCTGKHRFHL* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1408 665 SMART DUF4217_3 413 476 IPR025313 -
Gso13g1408 665 PANTHER RNA HELICASE 25 587 - -
Gso13g1408 665 Gene3D - 253 487 IPR027417 -
Gso13g1408 665 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Gso13g1408 665 MobiDBLite consensus disorder prediction 227 249 - -
Gso13g1408 665 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Gso13g1408 665 MobiDBLite consensus disorder prediction 504 529 - -
Gso13g1408 665 MobiDBLite consensus disorder prediction 504 556 - -
Gso13g1408 665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Gso13g1408 665 CDD SF2_C_DEAD 254 384 - -
Gso13g1408 665 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Gso13g1408 665 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Gso13g1408 665 Coils Coil 546 569 - -
Gso13g1408 665 SMART helicmild6 293 375 IPR001650 -
Gso13g1408 665 SMART ultradead3 34 254 IPR014001 -
Gso13g1408 665 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Gso13g1408 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Gso13g1408 665 CDD DEADc_DDX55 26 224 - -
Gso13g1408 665 Gene3D - 3 227 IPR027417 -
Gso13g1408 665 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Gso13g1408 665 Coils Coil 503 523 - -
Gso13g1408 665 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1408 Gso-Chr13 29588508 29594244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1408 22 389 Eukaryotic Initiation Factors Gene Family AT3G13920 29.268 1.26e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1408 K14809 - gmx:100807011 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0213 18 1833160 1837804 Gso13g1408 13 29588508 29594244 GST