Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1406 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAACTTCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGATCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTTCAGGAACTTCCGGTTCACCAGAGAGCGGATGCTGTGAGTAGTTTGGTGTATGAGGCACATGCAAGAGTTCGGGACCCGGTGTATGGTTGTGTTGGAGCCATATCCTATCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAGCAGGAGCCAGCGATTCCAAACCCAGAAATGGAAGACCCAGATCAGAAATCTTACCTTCTCCAAAATGAACTCCCTCAGTACCTCAACTATGCCTCTTCTAGCAATGTAATCTATGACTCTCTCTCAAGAGAGAGTATTTTTGGACATGACATGGTTTCTTGA 498 0.4598 MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPVHQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPAIPNPEMEDPDQKSYLLQNELPQYLNYASSSNVIYDSLSRESIFGHDMVS* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1406 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 157 - -
Gso13g1406 165 Coils Coil 85 105 - -
Gso13g1406 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Gso13g1406 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 157 - -
Gso13g1406 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1406 Gso-Chr13 29569174 29570094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1406 3 132 AS2 family AT2G30130 80.451 3.98e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso13g1406 LOB 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1406 - - gmx:121173085 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0215 18 1856218 1857273 Gso13g1406 13 29569174 29570094 GST
Gso13g1406 13 29569174 29570094 Gso14g0479 14 4550615 4551720 PCT
Gso14g0479 14 4550615 4551720 Gso13g1406 13 29569174 29570094 PCT