Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1401 ATGAGCAAAAACTGGAAATCTAGCTGCTTTCGGGATCCTGGGGGAGTTCTGTTCCTTCTTGTGTTGTGTTTGTTGTTTCAGAACTTTAGTTTGTGCTGCTCTTTGAATGAAGAAGGTAAAGCTCTTTTGAAGTTCAAACAGGGAATAGTAAACGACCCTTTTGATGCTTTGTCCAATTGGGTTAATGATGAAGTGGAAGTTAACCCGTGTAATTGGTTTGGAGTTGAGTGCTCCGATGGAAGAGTAGTGGTCTTGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCAAACCTTGTTCACATAAAGTCCATAATTTTGCGGAACAATTCTTTTCATGGAATCATCCCCCAAGGAATTGCACACTTGAATGAAATGGAGGTTTTGGATTTGGGCTACAACAACTTTAGTGGACCGCTACCTACAGATCTTGGGAATAATATTCCGCTGACAATCCTTTTGCTGGACAACAATGATCATCTTTGTGGTTTCTCTCCCGAAATTAATGAATTGAAGATGGTTTCTGAATATCAAGTAGATGAATACCAACTAAGTAGTGCAGAAAAAGTGCCAATAAGATCCATCAAACGCCATGCTGGCCAAAATAATGGTGTTCGGAAGCTACTGCAAGTTCGTACTCGTGAAGGTGGAAGTCCTTTTAATCGGGTTTTTCCTGATAGTCCTGCTCCATTTCCTTCAGCTCCCTCACCTGCCCCAGCAACGCCACCAGTGGTTCAGAAGCCAGCTCCCGTTGACCGAAATAATTCTGCTTCTCCTTCTCCCCTGCCTGAACCACGCTCTGCACCGCTATCTAAAAGTAGCTCATCAAAGAACCATCTAGTTGTTATTTTGGCTGGAGTTATGGGTGGTGTTGTATTTCTTCTCATTTCAATCATTGGCCTATATCTCTGTAAAACAAACAAGGTAGCTACTGTAAAACCTTGGGCAACAGGATTAAGTGGACAGCTTCAGAAGGCATTTGTAACAGGTGTGCCAAAGCTAAAGAGATCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGCACTTCATCCATTGGTACAGTTTACAAAGGGACTTTATCTAGTGGTGTCGAAATTGCTGTGGCATCTGTTGCAGCGACATCATCCAAAGATTGGTCAAAGACTCTAGAAGCCCAATTTAGGAACAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACATAAAAGAATCTGAGCACTTGGATTGGGGAACAAGACTTAGAGTTGCCATGGGCATGGCCTACTGCCTACAACATATGCACCAGTTGGAGCCTCCTTTGGTCCTTAGCAACCTGAATTCTTCAGGTGTCCAACTCACTGATGATTATGCTGCCAAAATCTCTGATTTGAGTTTCTTAAATGAAATAGCTTCAGCTGTGATAAAATCTCCTGCTAGAAAAAACACTGATATGACACCGGCAAGTAACATATACAGCTTTGGTGTTATATTATTTGAAATGGTAACTGGCAGACTCCCTTATTCAGTGGACAATGATGGCTCACTTGATGACTGGGCTTCACACTATTTACAAGGGGATCAGCCCCTCAAAGAAATGGTGGATCCAACTCTAGCATCCTTCCAAGAAGAACAGCTCGAACAAGTCGATGCTTTGATTAAATCTTGTGTCCATCCTGATCAAAAGCAAAGACCAACAATGAAAGAAGTTTGTGTGAGATTAAGAGAGATAACAAAAATAACACCTGATGCAGCTGTTCCAAAGCTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTGCTTCTGTAGATGCAAGCTGA 1917 0.4168 MSKNWKSSCFRDPGGVLFLLVLCLLFQNFSLCCSLNEEGKALLKFKQGIVNDPFDALSNWVNDEVEVNPCNWFGVECSDGRVVVLNLKDLCLEGNLVPELANLVHIKSIILRNNSFHGIIPQGIAHLNEMEVLDLGYNNFSGPLPTDLGNNIPLTILLLDNNDHLCGFSPEINELKMVSEYQVDEYQLSSAEKVPIRSIKRHAGQNNGVRKLLQVRTREGGSPFNRVFPDSPAPFPSAPSPAPATPPVVQKPAPVDRNNSASPSPLPEPRSAPLSKSSSSKNHLVVILAGVMGGVVFLLISIIGLYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSSGVEIAVASVAATSSKDWSKTLEAQFRNKIDTLSKVNHKNFVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKESEHLDWGTRLRVAMGMAYCLQHMHQLEPPLVLSNLNSSGVQLTDDYAAKISDLSFLNEIASAVIKSPARKNTDMTPASNIYSFGVILFEMVTGRLPYSVDNDGSLDDWASHYLQGDQPLKEMVDPTLASFQEEQLEQVDALIKSCVHPDQKQRPTMKEVCVRLREITKITPDAAVPKLSPLWWAELEIASVDAS* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1401 638 MobiDBLite consensus disorder prediction 229 250 - -
Gso13g1401 638 Gene3D Transferase(Phosphotransferase) domain 1 431 619 - -
Gso13g1401 638 SUPERFAMILY L domain-like 35 172 - -
Gso13g1401 638 MobiDBLite consensus disorder prediction 223 277 - -
Gso13g1401 638 PANTHER BNAA09G55080D PROTEIN 1 638 - -
Gso13g1401 638 MobiDBLite consensus disorder prediction 255 277 - -
Gso13g1401 638 SUPERFAMILY Protein kinase-like (PK-like) 331 607 IPR011009 -
Gso13g1401 638 Gene3D Ribonuclease Inhibitor 33 213 IPR032675 -
Gso13g1401 638 PANTHER PROTEIN MALE DISCOVERER 2 1 638 - -
Gso13g1401 638 ProSiteProfiles Protein kinase domain profile. 348 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1401 638 Pfam Protein tyrosine and serine/threonine kinase 350 606 IPR001245 GO:0004672|GO:0006468
Gso13g1401 638 Gene3D Phosphorylase Kinase; domain 1 320 430 - -
Gso13g1401 638 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1401 Gso-Chr13 29526542 29530782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1401 17 603 Receptor kinase-like Gene Family AT1G66830 25.470 1.38e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gso13g1401 PK_Tyr_Ser-Thr 5.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1401 - - gmx:100807163 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0220 18 1901132 1905425 Gso13g1401 13 29526542 29530782 GST
Gso13g1401 13 29526542 29530782 Gso14g0486 14 4610019 4614347 PCT
Gso14g0486 14 4610019 4614347 Gso13g1401 13 29526542 29530782 PCT