Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1396 ATGGTGCGTGTCAAAGAAGCTCTCGTTGTCACCCCTTCCGAGCCCACACCGAATACCGTTCTCTCACTCTCAGCTCTTGACTCCCAACTCTTCTTGCGCTTCACCATCGAGTATCTTTTTATTTACAGGCCCGGCCCGGGCCTGGACCCAACTTCCACCGCGGCTCGTTTAAAAGCTGCATTAGCCAAAGCGCTTGTTCCTTATTATCCATTCGCCGGAAGGGTTCGCTCCAGACCCGATGGCCCGGGCCTCGAGGTCGTTTGTCGGGCCCAGGGCGCTGTCTTCATCGAAGCCTCTTCTGAACGTTACACTTCCCATGATTTCCAAAAGGCCCCCAAGACAGTGGCACAATGGAGGAAACTATTATCTCTCTACGTCACCGACGTTCTCAAAGGCTCTCCAATTCTTGTTATTCAGCTGACGTGGCTTGCCGACGGCGCTGCAGCTGTCGGCGTCGGTATAAACCACTGCATCTGCGATGGCATCGGCAGTGCCGAGTTTCTCAATTATTTCTCGGACTTAGCATCCCATAATAATAACGTGAGTGTCGATCCCAAACCTAAACCGGTCTGGGATCGACAGCTCATGAATCCGGACAGCAGAACTCGGGCGAACCCGGCTATGCACGCCGAGTTTGTCCGGGTTCCGGATTTGTGCGGGTTCATGAACCGTGTCACGAGCGGGCTGAGACCAACTTGCATTGTGTTCGACGAGAGGCGGATCAACGCGCTGAAGGGCGCGTGCGGAATGTCGTCGTACACGTCGTTCGAGGTTCTGGCGGCGCACGTGTGGAGGAGTTGGGCGAGGGCGATGGGGTTTCCTAAAAACCAGACGCTGAAGCTTTTGTTTAGCGTGAACGTGCGGAAGCGCGTGAAGCCGGGACTGCCGGAGGGGTATTATGGGAATGCGTTTGTGTTGGGATGCGCGCAGACAAGCGCGTGGGAGTTGGGGGAGAGAGGGGTCAGGTACGGGTCGGGTCTGGTGAAGCGTGCGAAGGAGAGGGTGGACAGCGAGCACGTGCGGAGGGTGGTTGAGTTGGTGTCCGAGTCGAGGGCGAGTCCTGACTCGGTGGGGGTGCTGATTCTGTCGCAGTGGTCGAGGCTGGGGCTTGAGAGGGTTGAACTCGGGATGGGGAAGCCTCTGCATGTGGGGCCCATATGCTGTGATAGGTACTGTTTGTTTCTTCCGGTGACCGGTGAACGGGCGAGTGTGAAGGTCATGGTGGCTGTCCCCACCACCGCCGTTGACAACTTTCACCGTTTCCTCCGGGAATCGAATTTATGA 1284 0.5685 MVRVKEALVVTPSEPTPNTVLSLSALDSQLFLRFTIEYLFIYRPGPGLDPTSTAARLKAALAKALVPYYPFAGRVRSRPDGPGLEVVCRAQGAVFIEASSERYTSHDFQKAPKTVAQWRKLLSLYVTDVLKGSPILVIQLTWLADGAAAVGVGINHCICDGIGSAEFLNYFSDLASHNNNVSVDPKPKPVWDRQLMNPDSRTRANPAMHAEFVRVPDLCGFMNRVTSGLRPTCIVFDERRINALKGACGMSSYTSFEVLAAHVWRSWARAMGFPKNQTLKLLFSVNVRKRVKPGLPEGYYGNAFVLGCAQTSAWELGERGVRYGSGLVKRAKERVDSEHVRRVVELVSESRASPDSVGVLILSQWSRLGLERVELGMGKPLHVGPICCDRYCLFLPVTGERASVKVMVAVPTTAVDNFHRFLRESNL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1396 427 Gene3D - 224 424 IPR023213 -
Gso13g1396 427 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 3 421 - -
Gso13g1396 427 Gene3D - 1 213 IPR023213 -
Gso13g1396 427 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 421 - -
Gso13g1396 427 Pfam Transferase family 1 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1396 Gso-Chr13 29493854 29495447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1396 2 424 Monolignol Biosynthesis Gene Families AT5G48930 28.829 8.32e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1396 - - gmx:100803812 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g1396 13 29493854 29495447 Gso14g0489 14 4633930 4635615 PCT
Gso14g0489 14 4633930 4635615 Gso13g1396 13 29493854 29495447 PCT