Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1394 ATGTCGAACCCAGACACTCGATCATTCAATTGGCACTACACGGAACTCGATGACAGAGACCTAGAGATCCGAGGTAGGACACTGTTTTTCGTCATCGTACTCTTCTCCATTATTCTTCTTGTCACCGTTCTCTTCATCTACACGCGCTGGGTTTGCCGCTACCAGGGACGACTCCCCACCACCGCGTTCTCCGCCGCAGCCGTCCACGCGCCGCCGCTAGCGCCGCCTCAGGGACTGGACCCCGCCTCCATCAAGAAACTTCCCATAATCCTCCACCACGCGCCTGCGGACCGCGACGAAAGCGCGTGGGACGAAACGGAGTGCTGCATCTGTCTCGGCGAGTTCAGAGACGGTGAGAAAGTTAAGGTTTTGCCGGCGTGTGACCATTATTTTCACTGTGATTGTGTTGATAAGTGGCTCACTCATCACTCTAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCTAAGATTTTGATTCAGGAACCACCCCTTAGAATTGACTTCCAGTTCTAG 528 0.536 MSNPDTRSFNWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGRLPTTAFSAAAVHAPPLAPPQGLDPASIKKLPIILHHAPADRDESAWDETECCICLGEFRDGEKVKVLPACDHYFHCDCVDKWLTHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1394 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 165 IPR044675 -
Gso13g1394 175 SUPERFAMILY RING/U-box 98 156 - -
Gso13g1394 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Gso13g1394 175 SMART ring_2 108 149 IPR001841 -
Gso13g1394 175 CDD RING-H2_PA-TM-RING 107 150 - -
Gso13g1394 175 Pfam Ring finger domain 107 150 IPR001841 -
Gso13g1394 175 PANTHER RING-H2 FINGER PROTEIN ATL66 2 165 - -
Gso13g1394 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1394 Gso-Chr13 29468872 29469812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1394 11 158 C3H Transcription Factor Family AT3G11110 43.333 7.81e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1394 - - gmx:100803278 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0226 18 1951993 1952998 Gso13g1394 13 29468872 29469812 GST
Gso13g1394 13 29468872 29469812 Gso14g0491 14 4653839 4654662 PCT
Gso14g0491 14 4653839 4654662 Gso13g1394 13 29468872 29469812 PCT