Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1393 ATGATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGCTGGCACATGGGCACCAGCAACTGGGCTCAATGCAGTGATCATTCTTCTTCTTCTTCCTTTGCAGTGCCTACACAACAAATACTCCCTCATCATGTCACTGACGCTGCCTCTCTTCAATTTGGTGAGTTTCACTCATGGTCACTTCCCATTGAAGGGGCTGCAGAAGAGAGAGCAATAAGTGCTTCCAAGAGTCACAGGCAAGCTGAGAAAAGGCGCAGAGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTTATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTGAAAGATCTAAAGCGAAAAGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACTGAAATCGATGAAGTATCAATTCATCATGACCATGTTCTTCAAGATGAAAGCTGCACTGAAAAAGTGAACAAATTGAAGGACAATATTGTGATCAAGGCTTCTGTTTGCTGCGATGATCGACCAGAACTTTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAGTGAAAGTGTTTGCCTTGCCACTCTCAAACAGTCCCTCAAATCTGCTATCACCAAAATTGCTTCATCATCATCCATGGCTTCTAGTTGTCCCTCTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCACTGCCTACAGTAA 843 0.433 MMGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTSNWAQCSDHSSSSSFAVPTQQILPHHVTDAASLQFGEFHSWSLPIEGAAEERAISASKSHRQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIHHDHVLQDESCTEKVNKLKDNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSESVCLATLKQSLKSAITKIASSSSMASSCPSRSKRQRFFLPSHCLQ* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1393 280 CDD bHLH_AtAIG1_like 84 163 - -
Gso13g1393 280 Coils Coil 95 115 - -
Gso13g1393 280 Gene3D - 83 147 IPR036638 GO:0046983
Gso13g1393 280 PANTHER TRANSCRIPTION FACTOR BHLH51 46 278 - -
Gso13g1393 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 138 IPR011598 GO:0046983
Gso13g1393 280 SMART finulus 95 144 IPR011598 GO:0046983
Gso13g1393 280 Pfam Helix-loop-helix DNA-binding domain 92 138 IPR011598 GO:0046983
Gso13g1393 280 PANTHER TRANSCRIPTION FACTOR BHLH30 46 278 IPR045847 GO:0003700|GO:0006355
Gso13g1393 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 141 IPR036638 GO:0046983
Gso13g1393 280 CDD ACT_UUR-ACR-like 187 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1393 Gso-Chr13 29457535 29459344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1393 85 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 50.746 1.80e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g1393 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1393 - - gmx:100305722 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0227 18 1962040 1963860 Gso13g1393 13 29457535 29459344 GST
Gso13g1393 13 29457535 29459344 Gso14g0493 14 4670253 4672042 PCT
Gso13g1393 13 29457535 29459344 Gso2g2197 2 46684391 46686312 PCT
Gso14g0493 14 4670253 4672042 Gso13g1393 13 29457535 29459344 PCT
Gso2g2197 2 46684391 46686312 Gso13g1393 13 29457535 29459344 PCT