Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1385 ATGAAAACATCACCTTCCTCCGTTAACCTCTGTCTCGCCGTCGCCGTCGCCGCCGTCGTACTTATTCTCTCTCTGGTACCTTCATCCCATGGTTTTGGCTCCGGCACCACCCTGGCCCTCTCCGATGCCTCTGCCACCGTCTGCGCCGTCGTAGCATCCGAGTCCACGCGCCGCATTGAGTGTTACCGTCAGGGGCAGGTAGTTCCCATCGCTCCCAACGTTAATTTTTCGTCGATTTCCGGTGGGAGAAACTACTTCTGCGGCATAATGTCCAGCAACTCCAATCTACTTTGCTGGAACACAAACTCTTCCTTCGAAATGAGAAGGCTTTACAACAAAAGTTCTGTTCCATTGGAGAATCTCGCCGTCGGGGACACCCACGTTTGCGCCACCGCGGTGGGTGATGGCACGGTGCGGTGCTGGAGAACCGGTGACACGTTTCGAAATCCATCTGGGTCTGATCAATTCGCTTCAATTTCATCTGGGTCGGGCTTCTCTTGCGGAATTTTGAAGAATGGTTCTAAGGTTCGGTGTTGGGGAGACACCAACGTTGCGCAACAGATTGAAAATTCGTTTGGGAACATGTCCATGTTGAGTCTCGTCGCAGGTGGTTCGAATATTTGTGGGTTGAACTCAACGGGGTTTTTGGTGTGTTCTGGGCAACTTGATTTTCCTCGAGGTGGGGCTTTTGAGTATTCAGGGTTGGCACTTGGTGCTGAGCATGGTTGTGCTATTAGAGGGTCGAATGGTTGGGTTGTGTGTTGGGGTGGCAATGGACAATTCTCTGTAAATAATGTTACAGAAGGAGTTTCCTTTGAGGTAATTGTTTCTGGTTCTAACTTTGTTTGTGGATTGACAACGAACAATTTGAAAGTGGTGTGTTGGGGTCCTGGTTGGTCTAATTACTCTAATAGTTCGAGGTTTGAGCTTCCATTGCCTCGTGTTCTTCCAGGGCCTTGTGTTTCATTTTCTTGTGCAGAGTGTGGTTCATATGTTGATTCTCAAACTCTATGTTCTGGTTCTGGTAACATTTGTAAGCCAATGACATGTAGGCCTCAAACAACAGCGCCGCCTCCCCTGCTGCCAACACCACCACCACCATCCCAGTCTCCGCCGCCACCGCCACCGCCACCGCCATCACCACCCCCACCATCATCAACTCGATCGAAAACCTTGACAAGGGGGTTATTGGCTTTTGCTATTATTGGTTCAGTGGGAGCTTTTGCTGGAATATGCACAATAGTTCATTGCTTGTGGAGTGGAGTTTGTTTTGGGAAGAAGAAAGTACACAATTCTGTGCAGCCTACAATCACAAGAGGAAGCAGTGGCTCGAGTGGTGGGGGTGCTTCTAATAATAGCAATTCTTCGATATCATCTATGATTATGCGTCAGACTTCAATAATAATGAGGCGGCAGAGGAGTGGAACCTCATCAACAAAGCATCCAGACAGGGCTGAGGAGTTCACTCTAGCAGAGCTTGTGGCTGCCACCAACAATTTCTCACTTGAAAACAAGATTGGTTCTGGAAGCTTTGGTGTTGTGTACAAAGGCAAGCTCGCGGAGGGTCGTGAGGTGGCAATCAAGAGGGGTGAAACCGGGTCCAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCATTTGAGTCTGAATTGGCCTTCTTGTCGCGCCTGCACCATAAGCACCTTGTTGGGCTAGTTGGGTTCTGTGAAGAGAAAGATGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCATTGTATGATCATTTGCATGCAAAGAACAATGTGGAGAAGGAAAGCAGTGTATTGAATAATTGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCCCGGGGAATAGAATATCTTCACAATTATGCAGTTCCGTCTATTATTCACAGAGATATAAAGTCTTCCAACATTCTTCTTGATGCTACTTGGACGGCAAGAGTATCTGATTTTGGATTGTCTTTGATGAGTCCAGAACCTGACCGTGATCACCGACCAATGAAGGCAGCGGGAACAGTTGGATATATTGATCCTGAGTACTATGGTCTAAATGTGTTGACAGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTATTGCTTGAACTTTTAACGGGAAAGAGAGCTATATTCAAGTATGGAGAAGATGGAGGCACCCCATTGAGTGTGGTGGACTTTGCAGTGCCTGCTATTTTGGCCGGAGAATTAGTGAAAATTTTGGATCCAAGGGTTGGACCACCCGATGTGAATGAGGCCGAGGCAGTGGAATTAGTGGCCTATACAGCCATTCATTGTGTCAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGCCAATTTGGAGAGGGCTTTGGCTATTTGTGAGAGTAGCCATGACAGCACTTCCAGCGGTACTATCTCTGTTGTTTCAGAATGA 2430 0.4745 MKTSPSSVNLCLAVAVAAVVLILSLVPSSHGFGSGTTLALSDASATVCAVVASESTRRIECYRQGQVVPIAPNVNFSSISGGRNYFCGIMSSNSNLLCWNTNSSFEMRRLYNKSSVPLENLAVGDTHVCATAVGDGTVRCWRTGDTFRNPSGSDQFASISSGSGFSCGILKNGSKVRCWGDTNVAQQIENSFGNMSMLSLVAGGSNICGLNSTGFLVCSGQLDFPRGGAFEYSGLALGAEHGCAIRGSNGWVVCWGGNGQFSVNNVTEGVSFEVIVSGSNFVCGLTTNNLKVVCWGPGWSNYSNSSRFELPLPRVLPGPCVSFSCAECGSYVDSQTLCSGSGNICKPMTCRPQTTAPPPLLPTPPPPSQSPPPPPPPPPSPPPPSSTRSKTLTRGLLAFAIIGSVGAFAGICTIVHCLWSGVCFGKKKVHNSVQPTITRGSSGSSGGGASNNSNSSISSMIMRQTSIIMRRQRSGTSSTKHPDRAEEFTLAELVAATNNFSLENKIGSGSFGVVYKGKLAEGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHAKNNVEKESSVLNNWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDATWTARVSDFGLSLMSPEPDRDHRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGTPLSVVDFAVPAILAGELVKILDPRVGPPDVNEAEAVELVAYTAIHCVNLEGKDRPTMADIVANLERALAICESSHDSTSSGTISVVSE* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1385 809 SMART serkin_6 500 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1385 809 ProSiteProfiles Protein kinase domain profile. 500 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1385 809 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 806 - -
Gso13g1385 809 Pfam Protein kinase domain 501 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1385 809 SUPERFAMILY Protein kinase-like (PK-like) 477 785 IPR011009 -
Gso13g1385 809 Pfam Regulator of chromosome condensation (RCC1) repeat 157 182 - -
Gso13g1385 809 MobiDBLite consensus disorder prediction 355 390 - -
Gso13g1385 809 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Gso13g1385 809 Gene3D Phosphorylase Kinase; domain 1 460 580 - -
Gso13g1385 809 Gene3D - 150 305 IPR009091 -
Gso13g1385 809 Gene3D - 28 149 IPR009091 -
Gso13g1385 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Gso13g1385 809 SUPERFAMILY RCC1/BLIP-II 33 262 IPR009091 -
Gso13g1385 809 Gene3D Transferase(Phosphotransferase) domain 1 581 804 - -
Gso13g1385 809 MobiDBLite consensus disorder prediction 355 386 - -
Gso13g1385 809 MobiDBLite consensus disorder prediction 435 456 - -
Gso13g1385 809 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 806 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1385 Gso-Chr13 29347308 29350162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1385 12 809 Receptor kinase-like Gene Family AT3G55950 58.617 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso13g1385 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1385 - - gmx:100805573 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0237 18 2067968 2070862 Gso13g1385 13 29347308 29350162 GST