Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1384 ATGGCAAATCAAATGGATAGTGAAATTGAGAGCGTTAACATGATTGATATCACAGTTGACGCACCAAGTTTTGTTTCAAAAGTGGACAGTGCCATAAGGAGTGAGAGTGAGACTTGGTCAAATTTGGGAGCATCCCGCCTCCATAGTTTTGCTTCTGTAGTGGACTGGGCTATAAGGAGTAGCAGGACTGTGTCGAATTTGGGAACATCACCTGTCCCTAGTTTTGCTTCGGCAGAGGACAATAATGTGATGAGGGCTGTTCCTGCACGATTATTCACCTGGGCTGAGCTTGTAGCAGCCACCAACAATTTCTCAATTCACAACCAGATTGGTGCTGGCTGTTTCAGTGTTGTGTACAGAGGTAAACTTGTCGATGGTCGAGAGGTTGCAATCAAGACGGGTGGAACCTGGCCAAAGAGAGAGAGCAAATTGACCTTGTTATCCGGTTTACACCACAAGAACTTGATTGGGCTGGTTGGATTCTGTGAAACGAATTATGAAAGACTCAGTGTGTATGAGTACATGAAGAATGGGTCCTTGTATGATCGTTTGCATGACAAGGGTAGCAGTGTCTTGAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCCTCTCGAGGAATAGAATATCTTCATAATTATGCAGATTCCTTTATTATTCACGGAGATATCAAGTCTTCCAACATTCTTCTTGATGCCACCTGGACGGCAAGAGTATCTGATTTTGGATGGAAGTTTATGAGAAACAGACGACGAATAATTGAGAACACTGATCCTGAGTACGTTATTCGAGGTGCATTGTCAGCAGAGAGTGATGTGCATGGGCTTGGAGTTGTACTGTTTGAACTTCTAACAGGAAAGAGACCTACATTCGTGTACGGGGAAGATGGAGGCACCCTATTAAGTAGAAAGCATTTGGTAGACTTTGCTGTGACTGCTATTTCAAATGGATTTTTGGAGAAAATTTTGGATCAAAGGGCTGGACAACCCGATGTGAATGAAGCAGAAGCAGTAAAGTTAGTGGCTGATACCGCTATCCGTTGTGTGAATTTGAAACTGAAAGATAGACCAACCATGGCTGACATTGTAGTCAGATTAGAGCGGGCTTTGGCTATTTGTGAATATGATAGCATTTTCAGGGGTACCATCTATGATGTTTCAGAATGA 1170 0.4291 MANQMDSEIESVNMIDITVDAPSFVSKVDSAIRSESETWSNLGASRLHSFASVVDWAIRSSRTVSNLGTSPVPSFASAEDNNVMRAVPARLFTWAELVAATNNFSIHNQIGAGCFSVVYRGKLVDGREVAIKTGGTWPKRESKLTLLSGLHHKNLIGLVGFCETNYERLSVYEYMKNGSLYDRLHDKGSSVLNSWKMRIKIALDASRGIEYLHNYADSFIIHGDIKSSNILLDATWTARVSDFGWKFMRNRRRIIENTDPEYVIRGALSAESDVHGLGVVLFELLTGKRPTFVYGEDGGTLLSRKHLVDFAVTAISNGFLEKILDQRAGQPDVNEAEAVKLVADTAIRCVNLKLKDRPTMADIVVRLERALAICEYDSIFRGTIYDVSE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1384 389 SMART serkin_6 104 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1384 389 Gene3D Transferase(Phosphotransferase) domain 1 175 378 - -
Gso13g1384 389 SUPERFAMILY Protein kinase-like (PK-like) 85 367 IPR011009 -
Gso13g1384 389 ProSiteProfiles Protein kinase domain profile. 104 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1384 389 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 77 378 IPR044815 GO:0004674
Gso13g1384 389 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Gso13g1384 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Gso13g1384 389 Pfam Protein tyrosine and serine/threonine kinase 105 367 IPR001245 GO:0004672|GO:0006468
Gso13g1384 389 Gene3D Phosphorylase Kinase; domain 1 74 174 - -
Gso13g1384 389 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 77 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1384 Gso-Chr13 29339317 29340818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1384 89 389 Receptor kinase-like Gene Family AT3G55950 51.929 3.05e-88 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso13g1384 PK_Tyr_Ser-Thr 8.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1384 - - gmx:100805031 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0238 18 2073801 2075174 Gso13g1384 13 29339317 29340818 GST
Gso13g1384 13 29339317 29340818 Gso14g0501 14 4807988 4810785 PCT
Gso13g1384 13 29339317 29340818 Gso2g2188 2 46552331 46555084 PCT
Gso14g0501 14 4807988 4810785 Gso13g1384 13 29339317 29340818 PCT
Gso2g2188 2 46552331 46555084 Gso13g1384 13 29339317 29340818 PCT