Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1383 ATGTATGTGGTTTGGTGTCTGTATATGACATATGTGCTCAGTGCCTCCGCCAAAGCAAATAAAATGGATACTGAAATGGTTGAGAGCATTGATGTCACAGATGATGCAAGGAGTTTTAGCTGGGCAGTGGACAGCGCCATAAGGAGTGAGACTGGGTCCATTTTTGGAGAATCTCGTGTCCGTAGCTTTGCTTCGTTAGTGGACAGTGCCATAAGGAGTAGTAGTGCCAGTGAAGCAGATTTGGGATCATCCCCTTCCCCAGTGCATGCTTTTGCTTCCGCTGTGGATATCAGGACTGTTGCTGCACGATTATTCACCGTCTCTGAGCTTAACGTAGCCACCAACAATTTCTCATTTGACAACAAGATTGATGCTGGAGGCCTTGATGTTGTTGAGTACAGAGGCGAGCTCATTGATGGTCATGAGGTTGCAATCAAGAGGGTTAAAACCTGGCTAAACTTATTTGGTAAGTCTGAGTTTGCCTTGTTCTCCCGTTTACACCACAAGAATTTGGTTGGGCTGGTTGGATTTTGTGAAGCAAAAGATGAAAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCGTTGTATCATCATTTGCATGGCAAGAATGGTAGCAGTGTGTTGAATTCATGGAAAATGAGGATCAAAATTGCCGTCGATGTTTCACAGGGAATACAATATCTTCATAACTATGCATCTATTATTCACAGAAATATCAACTCTTCCAATATTCTTTTCGATGCTACTTGGACAGCAAGAGTATCTGGTTTTGATTTGTCGCTGATGAATCCAGAACCTGACTGGGATTACCGAACAATGGGGACTGTGGGAACATATGGATATATTGATCCTGAGTACTATGGTCTAAATGTCTTGACAGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTATTGCTTGAACTTTTAACGGGAAAGAAAGCTATATTCAAGTATGGGGCGAATGATTTTGTATCCACCACAATAAAAAGTGTGGTGGATTTTGCAGTGCCAACAATTTTGGCCGGAGAGTTAGTGAAAATTTTGGATCCAAGGGTTGGACCACCCGATGTGAATGAGGCCGAGGCATTGGAATTAGTGGCCTATACAGCCATTCATTGTGTCAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGCCAATTTGGAGAGGGCTTTGGCTATTTGTGAGAGTAGCCATATATGA 1215 0.4313 MYVVWCLYMTYVLSASAKANKMDTEMVESIDVTDDARSFSWAVDSAIRSETGSIFGESRVRSFASLVDSAIRSSSASEADLGSSPSPVHAFASAVDIRTVAARLFTVSELNVATNNFSFDNKIDAGGLDVVEYRGELIDGHEVAIKRVKTWLNLFGKSEFALFSRLHHKNLVGLVGFCEAKDERLLVYEYMKNGALYHHLHGKNGSSVLNSWKMRIKIAVDVSQGIQYLHNYASIIHRNINSSNILFDATWTARVSGFDLSLMNPEPDWDYRTMGTVGTYGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKKAIFKYGANDFVSTTIKSVVDFAVPTILAGELVKILDPRVGPPDVNEAEALELVAYTAIHCVNLEGKDRPTMADIVANLERALAICESSHI* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1383 404 SUPERFAMILY Protein kinase-like (PK-like) 100 392 IPR011009 -
Gso13g1383 404 ProSiteProfiles Protein kinase domain profile. 117 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1383 404 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 1 85 - -
Gso13g1383 404 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 94 401 - -
Gso13g1383 404 Gene3D Transferase(Phosphotransferase) domain 1 191 402 - -
Gso13g1383 404 Gene3D Phosphorylase Kinase; domain 1 88 190 - -
Gso13g1383 404 Pfam Protein kinase domain 137 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1383 404 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 85 IPR044815 GO:0004674
Gso13g1383 404 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 94 401 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1383 Gso-Chr13 29333443 29335008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1383 102 403 Receptor kinase-like Gene Family AT3G55950 59.627 3.07e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso13g1383 Pkinase 4.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1383 - - gsj:114381906 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0239 18 2078063 2086974 Gso13g1383 13 29333443 29335008 GST