Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1382 ATGCATATGGATTCAATCGATAAGGTGAAGTTTCTCTTGGCTTGCCTCGCACCTTCTCAATTAATATATATATGTATGTATGTGCTTTGGTGTCTGTATATGACATATGTGCTCAGTGCCTCCGCCAAATCAAATAAAATGGATACTGAAATGGTTGAGAGCATTGATGTCACAGATGATGCAAGGAGTTTTAGCTGGGCAGTGGACAGCGCCATAAGGAGTGATACTGGGTCCATTTTTGGAGAATCTCGTGTCCGTAGCTTTGCTTCGTTAGTTGACAGTGCCATAAGGAGTAGTAGTGCTACTGAAGCAGATTTGGAATCATCCCTTGTCCAGGCAGAAGACAGGGCGATGAGGACTGTTGCAGCACGATTAACAAAAGCCGTGTCAAATGCAAAAAGACATTTTGCTAAAGGATTATTTACCCGGGCTGAGCTTATACCAGTCACCCAGGCTGAGCTTGAACCAGCCACCAACAATTTCCCAGGATTATTATTTACCCTGGATGAGCTTAAAGCAGCCACCAATAATTTCTCATTTGACAACAAGATTGGTACTGGAGGCTTTGGTATTGTTGAGTACAGAGGCAAACTCATTGATGGTCGTGAGGTTGCAATCAAGAGGGGTAAAACCTGGTCAAACTCATTTGGTAAGTCTGAGTTTGCCTTGTTCTCCCGTTTACACCACAAGAATTTGGTTGGGCTGGTTGGATTTTGTGAACAAAAAGATGAAAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCGTTGTATCATCATTTGCATGACAAGAAGGGTAGCAGTGTGTTGAATTCATGGAAAATGAGGATCAAAATTGCGGTCGATGTTTCTGAGGGAATACAATATCTTCATAACTATGCATCTATTATTCACAGAAATATCAAGTCTTCCAATATTCTTTTCGATGCTACTTGGACAGCAAGAGTATCTGGTTTTGATTTTGCAGTGGGAACCTTTGGATATGTTGATCCTGAATACTTTCACCTAAATGTGGTGACGGAAAAAAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAAATTCTAACAGGAAGGAGAGCTGTACTCAAGTATGGGGCGAAAGATTATGTATGCACCCCAATAAAAAGTGTGGTGGATTTTGCAGTGCCTGTTATTTTGGCCGGAGAATTAGTGAAAATTTTGGATCCAAGGGTTGGACCACCCGATGAGAATGAGGCCGAGGCAATGGAATTAGTGGCCTATACAGCTATTCATTGTGTGAATTTGAAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGTCAATTTGGAGAGGGCTTTGGCTATTTGTGAGAGTAGCCATGTATGA 1353 0.4213 MHMDSIDKVKFLLACLAPSQLIYICMYVLWCLYMTYVLSASAKSNKMDTEMVESIDVTDDARSFSWAVDSAIRSDTGSIFGESRVRSFASLVDSAIRSSSATEADLESSLVQAEDRAMRTVAARLTKAVSNAKRHFAKGLFTRAELIPVTQAELEPATNNFPGLLFTLDELKAATNNFSFDNKIGTGGFGIVEYRGKLIDGREVAIKRGKTWSNSFGKSEFALFSRLHHKNLVGLVGFCEQKDERLLVYEYMKNGALYHHLHDKKGSSVLNSWKMRIKIAVDVSEGIQYLHNYASIIHRNIKSSNILFDATWTARVSGFDFAVGTFGYVDPEYFHLNVVTEKSDVYGLGVVLLEILTGRRAVLKYGAKDYVCTPIKSVVDFAVPVILAGELVKILDPRVGPPDENEAEAMELVAYTAIHCVNLKGKDRPTMADIVVNLERALAICESSHV* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1382 450 Pfam Protein kinase domain 179 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1382 450 ProSiteProfiles Protein kinase domain profile. 178 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1382 450 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 134 447 - -
Gso13g1382 450 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 26 105 - -
Gso13g1382 450 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 134 447 IPR044815 GO:0004674
Gso13g1382 450 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 26 105 IPR044815 GO:0004674
Gso13g1382 450 Gene3D Phosphorylase Kinase; domain 1 120 251 - -
Gso13g1382 450 Gene3D Transferase(Phosphotransferase) domain 1 252 448 - -
Gso13g1382 450 SUPERFAMILY Protein kinase-like (PK-like) 159 438 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1382 Gso-Chr13 29331612 29333035 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1382 166 449 Receptor kinase-like Gene Family AT3G55950 57.500 3.66e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso13g1382 Pkinase 5.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1382 - - gsj:114381906 890.952