Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1380 ATGTATGTGGTTTGGTGTCTGTATATGACATATGTGCTCAGTGCCTCCGCCAAAGCAAATAAAATGGATACTGAAATGGTTGAGAGCATTGATGTCACAGATGATGCAAGGAGTTTTAGCTGGGCAGTGGACAGCGCCATAAGGAGTGAGACTGGGTCCATTTTTGGAGAATCTCGTGTCCGTAGCTTTGCTTCGTTAGTGGACAGTGCCATAAGGAGTAGTAATGCTACTGAAGCAGATTTGGGATCATCCCCTGTCCATGTTTTTGCAATGGCAGAAGACAAGGCTGAGCTTAAACCAGCCACCAACAATTTCCCAGGATTATTATTTACCCTGGCTGAGCTTGAAGCAGCCACCAATAATTTCTCACGTGACAACATGATTGGTTATAAGGTGTACAGGGGCAAACTTGTTGATGGTCGTGAGGTTGCAATCAAGAAGATGATAAAATTCAGGAGAGACTCGTTTCGTAAGTCTGAATTTGCCATCTTGTCCCGTTTACCCCACCGGAACTTGGTTGGGCTGGTTGGGTTATGCAAAAACAGATATGAATGGTTGTTGGTGTATGAGTATACGAAGAAGGGGTCGTTGCATGATCATTTGCATGACAAGAACAATGTGGATGTGAATATCCAATTTTATACCGGTTATTTTTATCCTTTAAATAAAAAGTATTTTTATATTTTTAACAGAAGGTGA 699 0.4177 MYVVWCLYMTYVLSASAKANKMDTEMVESIDVTDDARSFSWAVDSAIRSETGSIFGESRVRSFASLVDSAIRSSNATEADLGSSPVHVFAMAEDKAELKPATNNFPGLLFTLAELEAATNNFSRDNMIGYKVYRGKLVDGREVAIKKMIKFRRDSFRKSEFAILSRLPHRNLVGLVGLCKNRYEWLLVYEYTKKGSLHDHLHDKNNVDVNIQFYTGYFYPLNKKYFYIFNRR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1380 232 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 1 97 - -
Gso13g1380 232 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 102 209 - -
Gso13g1380 232 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 97 IPR044815 GO:0004674
Gso13g1380 232 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 102 209 IPR044815 GO:0004674
Gso13g1380 232 Pfam Protein tyrosine and serine/threonine kinase 131 212 IPR001245 GO:0004672|GO:0006468
Gso13g1380 232 SUPERFAMILY Protein kinase-like (PK-like) 103 209 IPR011009 -
Gso13g1380 232 Gene3D Phosphorylase Kinase; domain 1 64 191 - -
Gso13g1380 232 ProSiteProfiles Protein kinase domain profile. 75 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1380 Gso-Chr13 29315932 29318215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1380 110 208 Receptor kinase-like Gene Family AT3G55950 56.364 4.73e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso13g1380 PK_Tyr_Ser-Thr 3.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1380 - - gsj:114380878 463.766