Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1379 ATGACATCACCGTGGAATAAGATTCACATTCACCACTCTCACCCTTCCCCTTCCCCGCCACCGCCACTTTCCGACTCCGACTCCGACGACTGCGGCGGCGATTCCTCCTCCTCCGCCCCCCTCCGCCACTCTGATCTCTCCGACTCCATCTTCAAGCCCTACCTCGAACTCTCCGGCCACTCCGGTGCCGACCTCTCGAAGATCCAATCCTTCCTGACCTCCTCCTCCGCCGGCGCTCTCTCCTGCCTCATCTGCCTCGAACGCATCAAACCCTCCGACCCCACCTGGTCCTGCTCCTCCCTCTGCTTCGCCGTCTTCCACCTCTTCTGCATCCAGAGCTGGGCTCGCCAAGCCTCCGACCTTGCCGCCGCCCGCGCCGCCACGCGCCTTCCTATTTCCCCCGCCACTGCCTCCGCCTCCGCCCTCTGGAACTGCCCCAAATGCAGATCCGAATACCCCAAATCTCACATTCCCAAAACCTATTTCTGCTTCTGCGGCAAAATAGAGAACCCTCCTAACGATCCATGGATTTTACCTCACTCTTGCGGCGAGGTTTGTGGAAGACCGTTGAAGCACAGTTGCGGCCACCATTGTTTGCTACTCTGCCACCCCGGGCCGTGCCCCTCTTGCCCCAAACTAGTTAAAGTTCGATGCTTTTGCGGGTGCCTTGAAGATGTTCGGCGATGTGGCTTCAAGGAATTTTCGTGTAACAAACCCTGTTCCAAGTTTTTAGATTGTGGGGTTCACCGTTGCATTGAGCTTTGCCACCCTGGCGCTTGCCCTCCTTGCCGGACACGTGGAGTGCACGCGTGCCAGTGTGCGAAGGTTAAAGAGGAGAGGGAGTGCTGTGATCGTGTTTTCCAGTGTGGGAATCCGTGTGAGAAGAGGCTTGGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTAAGTGTGGTGAGTGTCCCCTTAAGGGGAAGAGAACGTGCCCTTGTGGGAAAAGGGTTTATGAAGGAATGCCTTGTGATGCTCCTGTGCAGCTATGTGGAGCTACCTGTGATAAGATGTTGCCATGTGGCTACCACAGGTGCCCTGAGCGGTGCCACCGTGGACAGTGCGTTGAGACTTGCAGGGTTGTTGTGAAGAAGTCATGTCGTTGTGGCAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCGTGCGAAAGGAAGTGTCAGAGGATGCGTGACTGCGGTCGGCATGCTTGTAAGCGGCGCTGCTGTGATGGCGATTGCCCTCCCTGCTCTGAGATATGCGGCAGGAAGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGAGGGCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCATGTGCATGTGGAGAGACACGTTTTGAGGTTCCTTGTGGTACCGAAATGGACAATAAGCCACCTAGATGTCCTAAACCATGTCCTATCACTCCTTTATGTCGGCATGCATCAAATATCAAGCCACATAAATGCCATTATGGAGCCTGCCATCCTTGTCGGCTACCTTGTGCCAAAGAGTACCAATGTGGTCATACATGCAAATTAAGGTGTCATGGTGCTAAGCCTCCTCCTAATCCAGAGTTTACTCTTAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAAGTGTTCCTGGCACTCCATGCCCTCCGTGCCCAGAACTTGTGTGGAGATCATGTGTTGGGAAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTGATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGGTAATCATTATTGTACAAAAACCTGCCATGCCTTGGAGAACCAGTTACAAGGAAGCCAACCTTGTGAAGATTGTTATCTTTCTTGCCAAAAGGAAAGAGAGCCTGCATGTCCACATCACTGCCCTCGGCGATGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGTGCAATGGTCCATGTGTTTGAGTGCCTATATTACAACAGCTTGTCTGCAAAGGGTCAAGAGACTGTCCGCTCATGTGGTGGGCCATGTCACAGAAAGTTGCCAAATTGTACACATTTATGCCCAGAGACATGTCATTCTGGTCAATGCACAAATGCTGAGAAATGCTGTAAAAAGGTCACTGTTCGATGCAAATGCCATACATTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCAGCATATCATCTTGCTGGTTGCCATCCTAGGGATATTCCAAAAAATCAATTTGGAATTGGACTCATTCCTTGCAATTCTGATTGTAACAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTGCGTAAAACTAGAGTTACAGAGGTACAAGAGCCAGATGTAGAAAAATCAGTTCGGAAGCGGCGAAAAAGGCGGGAACAAGTTCTAGAATCCAAGGAAACTTCAAAACTACAGAAAATTATTTCAAGAATGAAGCGGCTTCTTCTATTTGTCTTTATTTTGGTCATACTTCTTGCTGCTACATATTATGGGTACAAGGGACTTTTATGGCTCAATGATTGGATGAATGAAGTGGATGAACGAAGACAAAGATATTCTAGAATCAAATGA 2622 0.4954 MTSPWNKIHIHHSHPSPSPPPPLSDSDSDDCGGDSSSSAPLRHSDLSDSIFKPYLELSGHSGADLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLFCIQSWARQASDLAAARAATRLPISPATASASALWNCPKCRSEYPKSHIPKTYFCFCGKIENPPNDPWILPHSCGEVCGRPLKHSCGHHCLLLCHPGPCPSCPKLVKVRCFCGCLEDVRRCGFKEFSCNKPCSKFLDCGVHRCIELCHPGACPPCRTRGVHACQCAKVKEERECCDRVFQCGNPCEKRLGCGKHVCERGCHSGKCGECPLKGKRTCPCGKRVYEGMPCDAPVQLCGATCDKMLPCGYHRCPERCHRGQCVETCRVVVKKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRKLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETRFEVPCGTEMDNKPPRCPKPCPITPLCRHASNIKPHKCHYGACHPCRLPCAKEYQCGHTCKLRCHGAKPPPNPEFTLKPKKKKIIQQSESVPGTPCPPCPELVWRSCVGKHIGAERMMVCSDKSQFSCENLCGNPLPCGNHYCTKTCHALENQLQGSQPCEDCYLSCQKEREPACPHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHVFECLYYNSLSAKGQETVRSCGGPCHRKLPNCTHLCPETCHSGQCTNAEKCCKKVTVRCKCHTLKKEWVCQDVQAAYHLAGCHPRDIPKNQFGIGLIPCNSDCNSKVQVVESELQLRKTRVTEVQEPDVEKSVRKRRKRREQVLESKETSKLQKIISRMKRLLLFVFILVILLAATYYGYKGLLWLNDWMNEVDERRQRYSRIK* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1379 873 CDD NF-X1-zinc-finger 289 336 - -
Gso13g1379 873 CDD NF-X1-zinc-finger 396 444 - -
Gso13g1379 873 MobiDBLite consensus disorder prediction 29 44 - -
Gso13g1379 873 CDD NF-X1-zinc-finger 423 471 - -
Gso13g1379 873 CDD NF-X1-zinc-finger 236 284 - -
Gso13g1379 873 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 20 870 - -
Gso13g1379 873 SUPERFAMILY RING/U-box 77 154 - -
Gso13g1379 873 CDD NF-X1-zinc-finger 343 392 - -
Gso13g1379 873 Pfam NF-X1 type zinc finger 427 451 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 406 424 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 601 611 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 299 317 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 640 655 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 246 264 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 500 510 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 353 372 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 519 528 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 Pfam NF-X1 type zinc finger 194 211 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 MobiDBLite consensus disorder prediction 1 44 - -
Gso13g1379 873 CDD NF-X1-zinc-finger 182 230 - -
Gso13g1379 873 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 20 870 IPR034078 GO:0003700
Gso13g1379 873 SMART znfxneu3 638 656 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 433 452 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 353 373 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 246 265 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 601 628 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 519 564 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 299 318 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 194 212 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 701 723 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 406 425 IPR000967 GO:0005634|GO:0008270
Gso13g1379 873 SMART znfxneu3 490 511 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1379 Gso-Chr13 29298612 29306713 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gso13g1379 zf-NF-X1 0.003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1379 K15683 - gmx:100799540 1830.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0240 18 2080443 2095477 Gso13g1379 13 29298612 29306713 GST