Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1375 ATGGCCTCTAGAGGAACTGGAACGCTGATTTTGGTTTGTCTCTTATGGCTTTTCTTCCTATGCGCCACCATAGCTTTCTTGCAGCTCAACTTCGTAGACAAAGGAACCACCAACAACAACCCTTCCTCTCGCAGTAGTAACTTCATCGCAACTCAACAGCATAGCGCTGATACCCCTTTGGAACAGGATTTGGAGGGTGTCACCCACAAGGTGTATTTTGATATTCAGATCCATGGCAAATTAGCGGGTCGCATAGTCATGGGCCTTTATGGGAACACAGTACCGAAAACTGCAGAAAACTTTCGAGCGCTTTGTACAGGAGAGAAAGGAGTGGGAAGAAGTGGGAAGTCTCTTCATTATAAAGGGAGCACATTCCATAGGATTATACCGAGCTTTATGGTCCAAGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTTAAGCTGAAGCATACCGGACCGGGATACTTATCCATGGCAAATTCTGGGGAAGACACCAATGGCTCCCAGTTCTTCATTACAACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTCGTATTTGGCAAGGTACTTTCCGGTATGGATGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAGCGGCTCGCCAAAGAACAAGGTTGTCATATTAGACAGTGGAGAATTAACTTCATGA 717 0.4547 MASRGTGTLILVCLLWLFFLCATIAFLQLNFVDKGTTNNNPSSRSSNFIATQQHSADTPLEQDLEGVTHKVYFDIQIHGKLAGRIVMGLYGNTVPKTAENFRALCTGEKGVGRSGKSLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGEDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVILDSGELTS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1375 238 CDD cyclophilin_ABH_like 69 234 - -
Gso13g1375 238 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 120 137 IPR020892 GO:0003755|GO:0006457
Gso13g1375 238 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 50 236 - -
Gso13g1375 238 Gene3D - 57 238 IPR029000 -
Gso13g1375 238 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 72 235 IPR002130 GO:0000413|GO:0003755
Gso13g1375 238 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 50 236 - -
Gso13g1375 238 SUPERFAMILY Cyclophilin-like 67 236 IPR029000 -
Gso13g1375 238 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 73 232 IPR002130 GO:0000413|GO:0003755
Gso13g1375 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 89 104 IPR002130 GO:0000413|GO:0003755
Gso13g1375 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 137 IPR002130 GO:0000413|GO:0003755
Gso13g1375 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 168 183 IPR002130 GO:0000413|GO:0003755
Gso13g1375 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 195 IPR002130 GO:0000413|GO:0003755
Gso13g1375 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 196 211 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1375 Gso-Chr13 29269751 29273127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1375 83 233 U-box Gene Family AT5G67530 43.137 5.39e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1375 K01802 - gmx:100798499 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0244 18 2122829 2125718 Gso13g1375 13 29269751 29273127 GST