Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1354 ATGGATGTGATAAAGACGCAGCAAATCTCATCTCGACCAATCGAGAAGGTGGTGGTTCACCCTCTCGTGCTTCTCAGCATCGTCGACAACTACAACAGAGTCGCCAAAGACACTCGCAAGCGCGTCGTCGGCGTCTTGCTCGGCTCCTCCTTCAAAGGCACCGTCGACGTCACCAACAGCTACGCCGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAATGATCTTGACATTCACGGCTTATTTAATGACTATGTTCCAAATCCTGTCTTGGTTATAATTGATGTTGAACCTAAGGAATTGGGAATCCCAACAAAAGCATATTATGCCGTTGAAGAGGTTAAAGAGAATGCCACTCAAAAAAGTCAAAAAGTGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCTTTGAAGGGTTTGGATGCAAGACTTAAAGAGATCAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAGGATGTGTTTAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTGCAGTGCCAAGTGCAGCTGCATAA 930 0.4344 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKTVAVPSAAA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1354 309 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Gso13g1354 309 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Gso13g1354 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 308 - -
Gso13g1354 309 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 308 - -
Gso13g1354 309 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso13g1354 309 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Gso13g1354 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso13g1354 309 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1354 Gso-Chr13 29034993 29038817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1354 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.060 2.82e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1354 K03038 - gmx:100790393 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0264 18 2327548 2331384 Gso13g1354 13 29034993 29038817 GST