Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1353 ATGTTATGTGCAAAAATGTCTTCTTCTTCTTCTTCTCCTGCTGTTCTCTCAAAATGCACCGTTTTCCCTCACCGGAACTCCACTCTGGGGGACCTCAAGCTCTCTATCTCCGACCTTAACATGTTTTTATCTCACTACATCCAAAAAGGCTGTCTCTTCGCCACTCCTTCACTTCCCTCTCACTCTCACACTCTCATCCCTCACCTCAAAAACGCGCTTTCCCAAACCCTCTCTCTCTTCCCTCCCCTCGCCGGCCGTCTCAAAACCGACACCGACGGCTTCGTTTACATCACATGCAACGACGCCGGCGTCGACTTCATCCACGCCACCGCCACCGATATCTCCGTCGCAGACCTCCTCTCCCCGTCGTCTTCGTCTGATGTCCCTCCAATCTCCAAGCAACTCTTCCCCTTCCACCACAAAATCAGTTACACCGCTCATTCTTCCCCTATCATGGCCTTCCAGGTCACCGATCTCGCCGACGCCGTCTTCCTCGGCTGCGCCGTCTGCCACTCCGTCACCGACGGCGCCTCCTTCTGGAACTTCTTCAACACCTTCGCCGGAATCTCAAGAGGAGCCACCATCTCTCCCTCCAGCCTCCCCGATTTCCGCCGCGAGTCCATCCTCAGCTCCAACGTCGTGCTCCGCCTGCCAGAAGATATCAAGGTGACCTTTAATGTGGAGGAACCTTTTCGCGAGAGAATCTTCAGCTTCAGCCGCGAATCAATTCAGAAACTGAAAGCTACTGTGAACAAAAGCTTGACATTGTTTCCTCCGCCAGAGAACGGTGACGCGGTTGAGTTGATGGCGAAGATGAGCAGCGACACGCAACTGAGAACGGTTACAGAGATTTCGTCGTTTCAGTCACTGTGCGCGCTGGTGTGGCGCTGCGTGACGAAGGCGCGAAATCTCGAGGGGTCGAAAACGACGACGTTTCGAATGGCAGTTAATGTTCGCCAACGCATGGAGCCCAAGTTGGGGGACAGTTACTTCGGGAACGCGATTCAGAGCATTGCCACGTGCGCAGAAGCTGGTGATGTGGCGTCTAAGGAGCTTCGCTGGTGCGCGGAGCAGCTGAACAAAAGCGTGAAGGCCTTCGATGGTGCTACGGTGCGCCGTAACTTGGAGAATTGGGAGCGCGAGCCTAAGTGCTTCGAGTTGGGAAACCACGACGGCGCCACCGTGCAGATGGGAAGCTCGCCGAGGTTTCCGATGTACGACAATGATTTTGGATGGGGGCGGCCCTTAGCCGTTCGCAGCGGCGGAGCGAACAAGTTTGACGGCAAGATGTCGGCGTTTCCCGGGAGGAATGGCGGCGGCGCCATCGATTTGGAGGTGGTTTTGGCGCCGGAAACCATGGCGCGACTCGAGTCTGATTCTGAGTTCATGTTTTACGTGTCTGGTTGGTAG 1410 0.556 MLCAKMSSSSSSPAVLSKCTVFPHRNSTLGDLKLSISDLNMFLSHYIQKGCLFATPSLPSHSHTLIPHLKNALSQTLSLFPPLAGRLKTDTDGFVYITCNDAGVDFIHATATDISVADLLSPSSSSDVPPISKQLFPFHHKISYTAHSSPIMAFQVTDLADAVFLGCAVCHSVTDGASFWNFFNTFAGISRGATISPSSLPDFRRESILSSNVVLRLPEDIKVTFNVEEPFRERIFSFSRESIQKLKATVNKSLTLFPPPENGDAVELMAKMSSDTQLRTVTEISSFQSLCALVWRCVTKARNLEGSKTTTFRMAVNVRQRMEPKLGDSYFGNAIQSIATCAEAGDVASKELRWCAEQLNKSVKAFDGATVRRNLENWEREPKCFELGNHDGATVQMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKMSAFPGRNGGGAIDLEVVLAPETMARLESDSEFMFYVSGW* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1353 469 Gene3D - 13 223 IPR023213 -
Gso13g1353 469 Pfam Transferase family 16 463 - -
Gso13g1353 469 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 10 467 - -
Gso13g1353 469 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 467 - -
Gso13g1353 469 Gene3D - 224 458 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1353 Gso-Chr13 29017891 29019817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1353 69 466 Monolignol Biosynthesis Gene Families AT5G48930 30.024 1.82e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1353 - - gmx:100799704 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0525 14 5015636 5017324 Gso13g1353 13 29017891 29019817 PCT
Gso2g2167 2 46333809 46335674 Gso13g1353 13 29017891 29019817 PCT