Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1349 ATGGAATTCGAGACTTCATATCCAACTTGTTTTATGTCAAATTCAAGTTGGTTTTCTCAAGAAGGCCAATTCACAGAATGGACAAGAGAAGAGAATAAGAAATTTGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGACAGATGGCTGAGGGTTGCAGCCATGCTCCCTGGAAAAACTGTCTATGATGTGATCAAACAATACAGAGAATTGGAAGAAGATGTTTGTGAAATAGAAGCAGGGAGGATTCCAGTTCCTGGATATCCTACCTCTTCTTTCACATTGGAGATGGTTGACAACCAATGTTATGATGCATGCAGAAAGAAGCCTGCAACTCTCAGGAGTTCTGATCAGGAGAGGAAGAAAGGGGTTCCTTGGACAGAAGAGGAACATAGACGTTTTCTGATGGGACTTTTAAAGTATGGTAAGGGGGATTGGAGAAATATCTCTCGCAATTTTGTTGTGACAAAAACTCCCACCCAAGTGGCAAGTCATGCTCAAAAGTATTATATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAAAGGAGGCCTAGTATCCATGATATCACCATTGTTAATCTTACATCAGATCAAGAGAAGCCTCTTTTATTCAATGATGAGTCTCACATGACTTCTGAGCAACAGAAGCTAACTAGCATGCCAAAAGTACAACTTGAATGGCGGATTAATCACCACAACAATGGCGGGTCAAATTATGATATGTTCGTGTCACCTAATTCATCTGGCTTCTCTTCCAAGACCCTCAAGTTGCAAGGGCAGGATTTCTATGAATGTGCTTTTCATGAGACTTATGCCAAGCTTAAAAATACGGGTTTCAGGACAGCTTCTAGAGACTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 900 0.4056 MEFETSYPTCFMSNSSWFSQEGQFTEWTREENKKFESALAIYDKDTPDRWLRVAAMLPGKTVYDVIKQYRELEEDVCEIEAGRIPVPGYPTSSFTLEMVDNQCYDACRKKPATLRSSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTSDQEKPLLFNDESHMTSEQQKLTSMPKVQLEWRINHHNNGGSNYDMFVSPNSSGFSSKTLKLQGQDFYECAFHETYAKLKNTGFRTASRDFNKEAIFGIHAL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1349 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Gso13g1349 299 Gene3D - 18 86 - -
Gso13g1349 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Gso13g1349 299 SMART sant 23 75 IPR001005 -
Gso13g1349 299 SMART sant 123 173 IPR001005 -
Gso13g1349 299 CDD SANT 126 170 IPR001005 -
Gso13g1349 299 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Gso13g1349 299 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Gso13g1349 299 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Gso13g1349 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 281 - -
Gso13g1349 299 Gene3D - 125 176 - -
Gso13g1349 299 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Gso13g1349 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 281 IPR043363 -
Gso13g1349 299 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Gso13g1349 299 CDD SANT 26 72 IPR001005 -
Gso13g1349 299 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1349 Gso-Chr13 28962335 28964823 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g1349 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1349 - - gmx:100783469 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0270 18 2393787 2396233 Gso13g1349 13 28962335 28964823 GST
Gso13g1349 13 28962335 28964823 Gso14g0529 14 5079370 5081714 PCT
Gso13g1349 13 28962335 28964823 Gso2g2163 2 46277471 46279794 PCT
Gso14g0529 14 5079370 5081714 Gso13g1349 13 28962335 28964823 PCT
Gso2g2163 2 46277471 46279794 Gso13g1349 13 28962335 28964823 PCT