Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1336 ATGAAGAACCTCAAAATGTCGGTTGCAGAGGATAAGTCTCAGTCTGAATATGAGATTATGGTGAAGAGGAATTGCAGGATTTGCTACCTCAGCATGGACATGGACATGACAAACCATAACAATGAATCAGCTGGGAATGCCATGACTCCCATTGAGCTGGGTTGTTCTTGTAAAGAGGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGGTCAAGGGTAACAAAGTTTGTGAAATCTGTGGATCCATTGCACGCAATGTAACTGTTGTAGCTGAAGTCCAAACGAATGAACAGTGGAATGAAGCAAATAATAATGCCTCAATGGTACCACCACCAACTGGACCTGCCCCCCAAGCAGAAACTAGACATCTCTGGCAGAGCCAACGGTTCCTGAATTTCATTCTTTCGTGTTTGGTCTTGGCTTTTGTCATATCCTGGCTTTTTCACTTCAATATGCCCTCATGA 477 0.4423 MKNLKMSVAEDKSQSEYEIMVKRNCRICYLSMDMDMTNHNNESAGNAMTPIELGCSCKEDLAAAHKHCAEAWFKVKGNKVCEICGSIARNVTVVAEVQTNEQWNEANNNASMVPPPTGPAPQAETRHLWQSQRFLNFILSCLVLAFVISWLFHFNMPS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1336 158 SMART ringv_2 24 85 IPR011016 GO:0008270
Gso13g1336 158 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 158 - -
Gso13g1336 158 Pfam RING-variant domain 25 84 IPR011016 GO:0008270
Gso13g1336 158 SUPERFAMILY RING/U-box 22 87 - -
Gso13g1336 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 95 IPR013083 -
Gso13g1336 158 ProSiteProfiles Zinc finger RING-CH-type profile. 17 91 IPR011016 GO:0008270
Gso13g1336 158 PANTHER ZINC FINGER, RING-CH-TYPE 10 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1336 Gso-Chr13 28852045 28853596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1336 22 158 C3H Transcription Factor Family AT5G05830 58.394 2.44e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1336 - - gmx:100797057 333.569