Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1322 ATGGCTCCTACCTCAGATATCAATCATCTTTCTCATCCTTGTATATACGGGGACTTTGTTTCTTCATACACAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAACATTGGATCCAGTAGAGGAAGGGGTGGTGGTCGTCATCTGCAGCAGCCTGTTGAGGAAAACATGGTTTGGCCTGCTCCTGCTAGATCCTTGGATGACCGTGCTAGATCTCGGAAGGAGGAAGAGGATCTAGATCACGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACTGGATATAGATGGCGAACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCAGGTTCTCATCTGCACATCCTCCATATGCCCCTGTACCTTTTTATCCCCGGGGATATGGTGTGCCATCGCATAACAGAACATGTGGAGGGTGCAACCAAGAGATACTCTATGGCAATTGTTTAGGAGTTGGCCATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAGGAATTGACACACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATGCTGCTGGTTTGATTGAATATAGATGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAATATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCGCGGGGTGAAAGATACTATAGATTGGAAGATGGAAGGATTTTGTGTTTTGAGTGCATGGAATCTGCTATAACAGACACTGGTGAATGTCAACCCCTTTATCATTCCATCAGAGACTATTATGAAGGAATGAACATGAAAATTGATCAACAAGTACCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGCTTCCATCACTTACCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGTGTATATAGATGGCCAAGAATTGGAGGCCATCGATTAATAAGCATGAGATCTCAAGCTCAAAGGCTGCCTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCACATGAGTTGATGCATGCTTGGTTACGCCTCAAAGGTTACCAAAACCTTAGTCTTGAAGTAGAGGAAGGTATTTGTCAAGTTCTTTCTTACATGTGGCTTGATGCAGAAGTCATGTCATGTGCTAGAACCACGCCCTCAACATCATCATCAGCTTCTTCCTCCTCTTACTCTAACTCATCAAAGAAAGGTGTGAAATCTCTTGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGATTCAGAGCAGCCAATCAAGCTGTGAATAAATATGGTTTACGTTGCACTTTGGAGCATATTCGTTTGACTGGTAATTTCCCACTGTAA 1530 0.4216 MAPTSDINHLSHPCIYGDFVSSYTERKSGFMKWFGKIFNIGSSRGRGGGRHLQQPVEENMVWPAPARSLDDRARSRKEEEDLDHAIALSLGENFKRPTGYRWRTGTDEDYAKALQDRRFSSAHPPYAPVPFYPRGYGVPSHNRTCGGCNQEILYGNCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYYRLEDGRILCFECMESAITDTGECQPLYHSIRDYYEGMNMKIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVYRWPRIGGHRLISMRSQAQRLPRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSLEVEEGICQVLSYMWLDAEVMSCARTTPSTSSSASSSSYSNSSKKGVKSLVENKLGEFFMNQIANDSSPAYGGGFRAANQAVNKYGLRCTLEHIRLTGNFPL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1322 509 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Gso13g1322 509 CDD LIM_DA1 145 197 - -
Gso13g1322 509 Gene3D Cysteine Rich Protein 140 202 - -
Gso13g1322 509 Pfam Protein DA1 294 504 IPR022087 -
Gso13g1322 509 SMART lim_4 144 196 IPR001781 -
Gso13g1322 509 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Gso13g1322 509 PANTHER PROTEIN DA1-RELATED 2 20 509 IPR045218 -
Gso13g1322 509 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 509 - -
Gso13g1322 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Gso13g1322 509 Pfam LIM domain 145 198 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1322 Gso-Chr13 28644084 28649275 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso13g1322 DA1-like 6.8e-96 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1322 - - gmx:100793901 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0298 18 2691419 2696582 Gso13g1322 13 28644084 28649275 GST
Gso13g1322 13 28644084 28649275 Gso14g1829 14 50679319 50692809 PCT
Gso13g1322 13 28644084 28649275 Gso2g2143 2 46067020 46072300 PCT
Gso14g1829 14 50679319 50692809 Gso13g1322 13 28644084 28649275 PCT
Gso2g2143 2 46067020 46072300 Gso13g1322 13 28644084 28649275 PCT