Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1321 ATGAAGGCACTAATTCTTGTTGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGTGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTTCATCAGATAGAGGCTCTCAAGGCCATTGGCGTCAATGAAGTGGTGCTAGCTATCAATTACCAACCAGAGGTCATGTTGAATTTCTTGAAAGAGTTTGAGACAAAGCTTGGTATCAAAATCACTTGTTCTCAAGAAACTGAACCGCTAGGTACTGCAGGCCCCTTGGCTCTTGCGAGGGATAAGCTAATAAGTGACTCTGGAGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTTAAAGAAATGATTCAATTCCACAAAACACACGGAGGAGAGGCTACCATAATGGTGACAAAGGTCGATGAGCCATCAAAATATGGTGTGGTTGTGATGGAGGAGACTACCGGGCAGGTTGAGAGATTTGTAGAGAAACCAAAGTTGTTTGTTGGCAACAAAATCAATGCTGGAATCTACCTATTGAACCCCTCAGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATCGAGAAAGAGGTGTTTCCAAAGATTGCAGCAGATAAAAAGCTATATGCAATGGTCCTGCCAGGATTCTGGATGGACATTGGACAACCAAAGGACTATATTTCTGGCCTGACACTTTACCTGGACTCGCTGAGGAAAAAGTCTCCTTCTAAACTGGCCAGTGGTCCTCACTTTGTGGGGAATGTCATTGTGCATGAAACTGCCACTATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCCATTGGTCCTGGCTGTGTTGTTGACTCAGGTGTCAGGCTTTCACGCTGCACAGTTATGCGAGGAGTTCGGATTAAAAAGCATACTTGCATATCCAACAGTATCATTGGGTGGCATTCCACTGTTGGGCAATGGGCCCGTGTGGAGAATATGACTATCCTTGGAGAAGATGTTCATGTTTGTGATGAAGTTTACAGCAATGGTGGCGTAGTTTTGCCTCACAAGGAGATCAAGTCAAACATTCTGAAGCCAGAGATAGTCATGTGA 1086 0.4448 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKEFETKLGIKITCSQETEPLGTAGPLALARDKLISDSGEPFFVLNSDVISEYPLKEMIQFHKTHGGEATIMVTKVDEPSKYGVVVMEETTGQVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAADKKLYAMVLPGFWMDIGQPKDYISGLTLYLDSLRKKSPSKLASGPHFVGNVIVHETATIGEGCLIGPDVAIGPGCVVDSGVRLSRCTVMRGVRIKKHTCISNSIIGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSNILKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1321 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Gso13g1321 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
Gso13g1321 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Gso13g1321 361 Gene3D Hexapeptide repeat proteins 237 358 - -
Gso13g1321 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Gso13g1321 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 231 IPR029044 -
Gso13g1321 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Gso13g1321 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1321 Gso-Chr13 28631882 28635719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1321 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 24.121 5.82e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1321 K00966 - gmx:100779367 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0301 18 2725329 2729262 Gso13g1321 13 28631882 28635719 GST
Gso13g1321 13 28631882 28635719 Gso14g0564 14 5400181 5403364 PCT
Gso13g1321 13 28631882 28635719 Gso2g2134 2 46001477 46004497 PCT
Gso14g0564 14 5400181 5403364 Gso13g1321 13 28631882 28635719 PCT
Gso2g2134 2 46001477 46004497 Gso13g1321 13 28631882 28635719 PCT