Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1319 ATGGAGTCCATGACGACCAGACTCTTCCTCTTCGCAGGGACTCTTCTACTGCTTCTACTCTCACGCGCCACGCACGTGTCATCCGCCACCTTATGTCCGCCGTGCGGCAACACGACGGTGCCGTTTCCCCTGAGCACAACCCCAACATGCGGCGACCCGTCGTACAAAATCCGATGCAGCAGCTCCAACACCCTCGTCTTCGACACGCTCAACAACTCCTACCCGATCGAGTCCATCGACCCGAACGCCCAGCGCTTCGTGATCCGACCCGCTCCGCTGTTAACGAACACGTGCGTGTCCACCGATAAAGTGCACCAGGGGATCCAGCTCAACACCACCCTCCCCTTCAACATCACAAGCTCCAACACCATCATGTATCTCAACTGCACCACCACGCTCCTCCAGTCCCCGCTCAACTGCTCCGCCGCCAGCGCCTGCCATTCCTACATCAAGGCCACCGCCTCCGCCGCCGCATGCCAGGGAGCTGGGCCACTCTGCTGCACCTATCGCACCGGCGGCTCCAGCAACTCCTACATGCTTCGTGTTAGAGACTCTGGCTGTAGCGCTTACTCTAGTTTCGTTAACCTCAACCCGGCACTCCCAGTGAACCGCTGGCCCGAACCGGGTTTGGAGATTCAGTGGCTTTCGCCCAAAGAAACCGTGTGTGGGTCCCAGCAGGATTGCGACTCCGCCACGTCGACTTGCGGGCCTGATGCTTCTTCTGCGCTCGGGATCAGGAGGTGCTTTTGTAACGATGGGCTCGTCTGGGACCCTATCCAAGGGGTGTGCGCTAAAAAAATTACTTGCCAGAACCCTGGTGGTTGTGACGACTCAACAAGCAGAACGGCCATAATAGCAGGTTCAGTATGTGGGGTTGGAGCTGCACTCATTCTTGCCGTCATTGCCTTTCTACTCTACAAACGCCACAGGCGCATCAAAGAAGCACAAGCACGCCTAGCCAAAGAGCGTGAAGGGATTCTAAATGCCAGTAATGGTGGCAGAGCCGCTAAACTTTTCAGTGGCAAAGAGTTAAAGAAAGCCACAAACGACTTCTCCAGTGACCGGCTTCTAGGTGTTGGAGGCTATGGTGAAGTCTACAAGGGCATTCTTCAAGATGGCACTGTTGTGGCTGTCAAGTGTGCCAAGCTTGGCAACCCCAAAGGCACTGATCAAGTCCTCAATGAGGTTCGCATATTATGCCAAGTTAACCACCGCAACCTTGTTGGTTTACTTGGTTGCTGCGTGGAACTGGAGCAGCCTATTATGGTTTATGAGTTCATAGAAAATGGGACACTTCTTGATCACTTGCAAGGTCAAATGCCTAAGAGCCGTGGCTTGCTTACATGGACTCATCGCCTTCAAATTGCACGTCACACCGCTGAGGGTCTCGCTTACCTTCACTTCATGGCTGTGCCTCCTATCTACCATAGAGATGTCAAGTCCAGCAACATTCTGCTAGATATCAAGATGAATGCCAAAGTTTCAGATTTTGGATTGTCTAGGTTGGCTCAGACAGATATGAGTCATATCTCTACTTGTGCTCAGGGGACCCTTGGTTACCTTGATCCTGAGTATTATAGGAACTACCAATTGACTGATAAGAGTGATGTTTACAGTTTTGGGGTGGTGCTACTTGAGCTTTTGACAGCTCAGAAGGCAATAGATTTTAACAGGGCTGCTGATGATGTGAACTTGGCGATTTACGTGCATCAGATGGTGGCCGAGGAAAAGTTGATGGATGTCATTGATCCAGTGTTGAAGAATGGAGCTACCACTATAGAGCTAGAGACGATGAAGGCAGTGGCGTTTTTGGCATTGGGTTGCTTGGAGGAAAAGAGACAGAATCGACCTTCAATGAAAGAGGTGGCAGAAGAGATTGAGTATATCATTAGTATTGCCTCGGCAAAGGTAGTGGAGAACTAG 1923 0.5185 MESMTTRLFLFAGTLLLLLLSRATHVSSATLCPPCGNTTVPFPLSTTPTCGDPSYKIRCSSSNTLVFDTLNNSYPIESIDPNAQRFVIRPAPLLTNTCVSTDKVHQGIQLNTTLPFNITSSNTIMYLNCTTTLLQSPLNCSAASACHSYIKATASAAACQGAGPLCCTYRTGGSSNSYMLRVRDSGCSAYSSFVNLNPALPVNRWPEPGLEIQWLSPKETVCGSQQDCDSATSTCGPDASSALGIRRCFCNDGLVWDPIQGVCAKKITCQNPGGCDDSTSRTAIIAGSVCGVGAALILAVIAFLLYKRHRRIKEAQARLAKEREGILNASNGGRAAKLFSGKELKKATNDFSSDRLLGVGGYGEVYKGILQDGTVVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPIMVYEFIENGTLLDHLQGQMPKSRGLLTWTHRLQIARHTAEGLAYLHFMAVPPIYHRDVKSSNILLDIKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRAADDVNLAIYVHQMVAEEKLMDVIDPVLKNGATTIELETMKAVAFLALGCLEEKRQNRPSMKEVAEEIEYIISIASAKVVEN* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1319 640 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 635 IPR045274 GO:0007166
Gso13g1319 640 Pfam Protein tyrosine and serine/threonine kinase 354 625 IPR001245 GO:0004672|GO:0006468
Gso13g1319 640 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Gso13g1319 640 PANTHER OS05G0318100 PROTEIN 21 635 - -
Gso13g1319 640 CDD STKc_IRAK 357 627 - -
Gso13g1319 640 Pfam Wall-associated receptor kinase galacturonan-binding 32 88 IPR025287 GO:0030247
Gso13g1319 640 SMART serkin_6 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1319 640 SUPERFAMILY Protein kinase-like (PK-like) 335 626 IPR011009 -
Gso13g1319 640 CDD TM_EGFR-like 278 314 - -
Gso13g1319 640 Gene3D Transferase(Phosphotransferase) domain 1 427 638 - -
Gso13g1319 640 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1319 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Gso13g1319 640 Gene3D Phosphorylase Kinase; domain 1 312 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1319 Gso-Chr13 28613695 28616739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1319 1 639 Receptor kinase-like Gene Family AT5G02070 51.657 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso13g1319 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1319 - - gmx:100305415 1233.78