Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1316 ATGGCGGAATTGGAGGAGGAGCGGATGGGAGGGGATTTCAAGCCCTTCTCGGAGGGCTCTTCGTGCTCGCGTTCGATCAGCGAAACCGTGAACGGCTCGCACCAATTCACAATAAAGGGTTACTCTTTGGCCAAAGGGATGGGCGCGGGAAAGTACATCATGAGCGACACTTTCACCGTTGGTGGTTACGATTGGGCTATTTACTTCTACCCTGATGGGAAGAACCCTGAGGACAATTCCATGTACGTTTCGGTCTTTATTGCGCTCGCTAGCGACGGAACCGATGTTAGGGCTCTCTTCAAGTTGACGCTGGTGGACCAGAGTGAGAAGGGGAATGATAAAGTTCATAGCCATTTCGATCGCCCTCTAGAGAGTGGACCTTATACCTTGAAGTATAAAGGCAGCATGTGGGGTTACAAACGCTTCTTCAGAAGATCACTACTGGAAAATTCACTGTATCTAAAAAATGATTGCCTTGTCATGCATTGCACTGTTGGGGTCGTTAAAACTCGTTTTGAGGGATCTAAACAGGGTGTTATCGTGCCACAGTCAGACATGGGCCGAGATTTTAAGGACTTGTTGGAATCTGAGGTTGGTTGTGACATAGTTTTCAAGGTCAAAAGTGAAAGCTTCAAAGCTCATAAGTTGATACTTGCAGCCCGATCTCCTGTGTTTAGAGCGCAGTTTTTTGGGCTTGTTGGGGATCCTACCTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTCTTCATCTACTCTGACAAACTTCCTGGCATATATGAGGTTATGGACTCGATGCCCCTGTGCTCATACACTGTCATGGTGCAGCATCTCTTGGCTGCTGCTGATCTCTATAATCTTGATCGGCTCAAACTGCTTTGTGAATCAAAATTATGTGAAGAAATCAATACTGACAATGTGGCCACAACACTTGCGCTGGCAGAGCAACACCACTGTCCACAGCTTAAGGCAATCTGTTTAAAATTTATTGCAAATCCTGCAAACTTGGGAGCTGTAATGCAGTCAGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCTCAATGCTGTTGGAATTGCTGGAGACATTTGCATCAGTGGATGATAACTCAGGCCAGACATTAAGCAGAAAGAGAAGTGGCAGTAGCATATATGGTCAAGATTTAGCAGATGGGGCAGCTGCTGAATCAGTTAATCCGAATGGCAGGCGAGTAAGGAGGCGGACATAA 1248 0.4631 MAELEEERMGGDFKPFSEGSSCSRSISETVNGSHQFTIKGYSLAKGMGAGKYIMSDTFTVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDRPLESGPYTLKYKGSMWGYKRFFRRSLLENSLYLKNDCLVMHCTVGVVKTRFEGSKQGVIVPQSDMGRDFKDLLESEVGCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPTLEEVVVEDIEPFIFKAMLLFIYSDKLPGIYEVMDSMPLCSYTVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDNVATTLALAEQHHCPQLKAICLKFIANPANLGAVMQSEAFVHLKESCPSMLLELLETFASVDDNSGQTLSRKRSGSSIYGQDLADGAAAESVNPNGRRVRRRT* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1316 415 CDD BACK_AtBPM-like 306 369 IPR034090 -
Gso13g1316 415 CDD BTB_POZ_BPM_plant 186 306 - -
Gso13g1316 415 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 380 IPR045005 GO:0016567
Gso13g1316 415 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 19 380 - -
Gso13g1316 415 SMART BTB_4 200 309 IPR000210 GO:0005515
Gso13g1316 415 Gene3D - 308 389 - -
Gso13g1316 415 SMART math_3 36 148 IPR002083 GO:0005515
Gso13g1316 415 Gene3D Potassium Channel Kv1.1; Chain A 176 304 IPR011333 -
Gso13g1316 415 ProSiteProfiles MATH/TRAF domain profile. 31 165 IPR002083 GO:0005515
Gso13g1316 415 SUPERFAMILY POZ domain 182 307 IPR011333 -
Gso13g1316 415 MobiDBLite consensus disorder prediction 1 27 - -
Gso13g1316 415 SUPERFAMILY TRAF domain-like 28 170 - -
Gso13g1316 415 Pfam BTB/POZ domain 190 307 IPR000210 GO:0005515
Gso13g1316 415 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 30 170 IPR008974 GO:0005515
Gso13g1316 415 CDD MATH 32 165 IPR002083 GO:0005515
Gso13g1316 415 ProSiteProfiles BTB domain profile. 200 263 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1316 Gso-Chr13 28581664 28587238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1316 K10523 - gmx:100778300 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0304 18 2765899 2771120 Gso13g1316 13 28581664 28587238 GST