Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1313 ATGGCTGGAATTTGCTGTGGTGTTGTCGGAGAAGGTGACACTCCGGCTCCACTCGAGCCAACTACTCGCCCCTCCAGGCGCCGGAGTTTGGACATCTTACCCTTAAAATACATCGCTGACATGGCGGTGCCGCCGTCGGATGGTTCACGGAAACGTCCCAAGCTGGATCTCAGGGACCGCGATAACGTAGTTCAAAATTGCGACGAATCCACTGGACACAAGGTGGTGAAAAAAGAAGCCAAAGTGGAAATCCACGACAATGTTTCCGAAACGAAAAACGTAACTGTTGCGGATGCTTCGGAAGTTGAAGATTCTCCTAAGTTCGGCGTGACGTCAGTTTGCGGCAGGAGAAGAGACATGGAAGATTCCGTTTCGGTGCGGCCTTCCTTCACCCAAGGCTTCCACTACTTTGGCGTTTTCGACGGTCACGGTTGCTCTCATGTCGCGACTATGTGCAAGGAGCGGTTACACGAGATCGTGAATGAAGAGATTGACAGCGCGCGCGAGAATTTGGAGTGGAAGCTGACGATGGAGAACGGATTCGCTCGCATGGACGACGAGGTTAATCGCAGGAGCCAGAGCAACCAGACCTTCACCTGCAGGTGCGAGCTCCAGACTCCCCACTGCGACGCCGTCGGATCCACCGCCGTCGTCGCCATCGTCACGCCGGACAAACTCGTCGTTTCCAACTGCGGCGACTCCCGCGCCGTCCTCTGCCGGAAAGGCGTAGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGACCCGACGAACTGCTCCGAGTCCAATCCAAGGGAGGGCGCGTGATTTACTGGGACGGTCCCAGAGTGCTTGGTGTGTTAGCCATGTCTCGAGCCATAGGTGACAATTATCTGAAGCCGTACGTGATTTCTGAACCGGAGGTGACGGTGACGGAGCGGACGGAGGAGGACGAGTGTTTGATACTGGCGAGTGATGGGTTGTGGGATGTGGTGTCGAATGAAACCGCATGTGGTGTGGTGAGGATGTGCCTCAAGGCGCAGAAGCCGCCGTCGCCGCCGGGATCTCCGGGGAGTGACGTGGCGGCGGACGGTTCCGACCGGGCTTGCTCCGATGCGTCGATTTTGTTAACCAAGTTAGCGTTGGCGAGGCATAGTTCGGATAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGAGATCAACGACAATCATCAAACTCCAATTAA 1206 0.5605 MAGICCGVVGEGDTPAPLEPTTRPSRRRSLDILPLKYIADMAVPPSDGSRKRPKLDLRDRDNVVQNCDESTGHKVVKKEAKVEIHDNVSETKNVTVADASEVEDSPKFGVTSVCGRRRDMEDSVSVRPSFTQGFHYFGVFDGHGCSHVATMCKERLHEIVNEEIDSARENLEWKLTMENGFARMDDEVNRRSQSNQTFTCRCELQTPHCDAVGSTAVVAIVTPDKLVVSNCGDSRAVLCRKGVAIPLSSDHKPDRPDELLRVQSKGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTEEDECLILASDGLWDVVSNETACGVVRMCLKAQKPPSPPGSPGSDVAADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQRQSSNSN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1313 401 SMART PP2C_4 95 388 IPR001932 -
Gso13g1313 401 Pfam Protein phosphatase 2C 108 382 IPR001932 -
Gso13g1313 401 SUPERFAMILY PP2C-like 106 391 IPR036457 -
Gso13g1313 401 SMART PP2C_SIG_2 121 390 IPR001932 -
Gso13g1313 401 PANTHER ALPHABET, ISOFORM E-RELATED 30 395 - -
Gso13g1313 401 ProSiteProfiles PPM-type phosphatase domain profile. 107 390 IPR001932 -
Gso13g1313 401 CDD PP2Cc 107 339 IPR001932 -
Gso13g1313 401 Gene3D - 102 400 IPR036457 -
Gso13g1313 401 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 30 395 - -
Gso13g1313 401 ProSitePatterns PPM-type phosphatase domain signature. 136 144 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1313 Gso-Chr13 28548964 28550956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1313 1 400 PP2C-type Phosphatase Gene Family AT3G11410 59.179 1.64e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1313 K14497 - gmx:100776356 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0307 18 2802884 2804863 Gso13g1313 13 28548964 28550956 GST
Gso13g1313 13 28548964 28550956 Gso14g0569 14 5459152 5461460 PCT
Gso13g1313 13 28548964 28550956 Gso2g2129 2 45946091 45948189 PCT
Gso14g0569 14 5459152 5461460 Gso13g1313 13 28548964 28550956 PCT
Gso2g2129 2 45946091 45948189 Gso13g1313 13 28548964 28550956 PCT