Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1303 ATGGAGGAATCACAGTACTTGCTGTGGATCAGGAGAAAACAAATGTTGAAGTCACATATTCAGCAACCATTTGGAACCAACAACAACTCATCATCATGGGAGGAAAGGGCCTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCACGGTCTTACTCATGCAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTGCACAGGAGGGACAGGGCTAGACTCAAACAAAGCCTTAGTCACCACCATAATGAATTAGCCCTTCAACATCATCACAAAAATGATTGTACAGTTGCAACAAGCAAAGTCTCATCTTCTAGGCCTTCAAATATATCTATCCAAGAAAATTGTTATCATCATCAGCCTACCATGTCTTCTTATTCTTCCTCAATTGGGTGGGGACACCATCATCACAACATGGGGTCTTCTGATTCAGAACCAAAAGAGCAAGTGACTGCAAGGGAAGAGTTTTTAAAAGGTTTGGGTTGTAATGATTTTTTTGAAACAAGTTTGTCTGTGGGACAAAGTGCAGTAGTGTTTGGCCAAAAATTGCCAACAACAACTGATCATTCATGTGGGGACGAAGCCATCAGTTATAAAAGATCAAAAACTTCTATGGCTCCTTTGCCTGCTGTTTTCCTCAAGCCATGTTCAAATGATAGAAACCTAACTTTTCAGTCCGCTGAATTTGTACTTGGAGTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 795 0.4201 MEESQYLLWIRRKQMLKSHIQQPFGTNNNSSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSHHHNELALQHHHKNDCTVATSKVSSSRPSNISIQENCYHHQPTMSSYSSSIGWGHHHHNMGSSDSEPKEQVTAREEFLKGLGCNDFFETSLSVGQSAVVFGQKLPTTTDHSCGDEAISYKRSKTSMAPLPAVFLKPCSNDRNLTFQSAEFVLGVKPGMEDLDLELRLGKPQKVI* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1303 264 Pfam C2H2-type zinc finger 56 80 - -
Gso13g1303 264 PANTHER OS07G0101800 PROTEIN 1 264 - -
Gso13g1303 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Gso13g1303 264 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Gso13g1303 264 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 264 - -
Gso13g1303 264 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Gso13g1303 264 SMART c2h2final6 56 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1303 Gso-Chr13 28434226 28435381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1303 27 88 C2H2 Transcription Factor Family AT2G37740 74.194 9.83e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1303 zf-C2H2_6 2.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1303 - - gmx:100788082 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0316 18 2889707 2891036 Gso13g1303 13 28434226 28435381 GST
Gso13g1303 13 28434226 28435381 Gso14g0570 14 5471517 5472710 PCT
Gso13g1303 13 28434226 28435381 Gso2g2128 2 45928767 45929627 PCT