Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1301 ATGGCGAATCGATGGTGGACTGGGAATGTGGGAATGATAAGAGAGCAAGAGTTGATGGAGAACAGCAACAACAACAACGCTACTACTACACCGACGAATAGCAGCAACAGCAACACTAATGCGAACACAAACACGACCGAGGAAGAGGTGAGCAGGGACAACGGAGAGGACCTGCAGAACCAAAACCTCGGAAGCCACGAAGGCTCGGAGCCAGGAAGCAGCGGTCGGAGGCCACGTGGCAGGCCACCTGGGTCCAAGAACAAGCCCAAGCCGCCCATAGTCATAACCAAGGAAAGTCCCAACGCACTCCGAAGCCACGTCCTGGAAATCACCTCCGGCAGTGACGTTGCTGAGAGCATCGCCGCCTTTGCCAACCGCCGCCACCGCGGCGTGTCGGTGCTCAGCGGGAGTGGCATTGTCGCCAACGTCACTCTCCGCCAGCCCGCCGCCCCGGCCGGCGTCATAACGCTCCATGGGAGGTTCGAGATACTGTCCCTCTCGGGAGCCTTTTTGCCGTCCCCCTCGCCGCCGGGAGCCACGGGACTAACTGTCTATTTGGCTGGCGGGCAGGGGCAGGTTGTCGGTGGCACTGTCGCCGGCTCGCTCGTTGCCTCCGGGCCCGTGATGGTGATCGCCGCCACTTTTGCTAATGCCACCTATGAGAGGTTGCCACTGGAGGATGAACAAGGTGAGGAGGGAATGCAAGTGCAACAGCAGCAGCAGCAGCAACAATCTCAAGGTTTGGGTGAACAGGTTTCAATGCCTATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGCTTTGGGGAGCTCCACCTCGCCCTCCTCCTTCCTTCTAA 861 0.5807 MANRWWTGNVGMIREQELMENSNNNNATTTPTNSSNSNTNANTNTTEEEVSRDNGEDLQNQNLGSHEGSEPGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEITSGSDVAESIAAFANRRHRGVSVLSGSGIVANVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEGMQVQQQQQQQQSQGLGEQVSMPMYNLPPNLLHNGQNMPHDVLWGAPPRPPPSF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1301 286 MobiDBLite consensus disorder prediction 22 48 - -
Gso13g1301 286 CDD DUF296 104 215 IPR005175 -
Gso13g1301 286 Gene3D - 103 245 - -
Gso13g1301 286 MobiDBLite consensus disorder prediction 232 252 - -
Gso13g1301 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 228 - -
Gso13g1301 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 216 IPR005175 -
Gso13g1301 286 ProSiteProfiles PPC domain profile profile. 100 237 IPR005175 -
Gso13g1301 286 MobiDBLite consensus disorder prediction 228 286 - -
Gso13g1301 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 21 282 - -
Gso13g1301 286 MobiDBLite consensus disorder prediction 22 100 - -
Gso13g1301 286 PIRSF ESCAROLA 14 285 IPR014476 GO:0003680
Gso13g1301 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 282 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1301 Gso-Chr13 28414922 28421348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1301 1 286 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 54.259 2.27e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1301 - - gmx:102667174 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0317 18 2912623 2914518 Gso13g1301 13 28414922 28421348 GST