Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1298 ATGCTTGCTCTTGATAAATTAAAACAAAGTATGTTACATGTGAATAGAGTTTTTCTGTGTTCTATTATTCACTTGCTCTGCCTCATGATGGTCAAAACCAAAACACTTTCACTTGTGCTTCATCTCTGTGTTATGACCATTATGGTCACAAACCTTGCAAAATCTCAGCAAGAAGAGTTTTTCTTCAATGGGTTTGGTGGTGCTGCTTCCTCCAACATAACCTTAAATGGAGGAGCAGTGATTGAGCACAAGGGAATACTTCGTTTAACAAACGACACTCAGAGAGTAATAGGGCACGCGTTTTATCCAACCCCAATTCAGTTCAAGCACAGAAACAAAAACGCCACCAAAGTTTTCTCCTTTTCCACCGCTTTTGCGTTTGCAATCATCCCACAGCACCCAAAACTCGGTGGCCACGGTTTCGCCTTCACCATTTCGCGCTCCAGATCGCTTGAAGATGCGTACCCGAGCCAGTACTTGGGTCTCCTCAACCCAAACGACGTGGGGAATTTCTCAAACCACCTTTTCGCGGTGGAATTCGACACCGTCCAAGACTTCGAGTTCGGGGACATCAATGGCAATCATGTCGGCATCAACCTCAACAACTTGGCATCCAACAAATCCGTCGAAGCCGCGTTTTTTACCTCCACAAATAATAAGCAGAAGCTCAATTTGAAGAGTGGTGAAGTGACTCAAGCATGGGTTGATTACGATTCCTTAAAAAACAATTTAGAAGTTCGACTCTCCACAACTTCTTCCAAACCCACTTCACCAATTTTGTCATACAAAGTAGATCTCTCACAAATTATCCAAGATTCCATGTACGTGGGGTTCTCTTCTTCAACTGGGTTACTCTCAAGCTCCCACTATATTTTAGGTTGGAGCTTCAAAATAAACGGAGACGCCAAAACTCTCTCCTTGAAAAATCTTCCTTCGCTCTCTGCCTCCAGCAAACCTCAAAAGCGATTAATCTTTGCACTTTCCCTTTCACTGATCATTCCAACAGTACTCGCAGCAACTGCTCTAGCATGTTATTATTTCCTCTTGAGAAAGATGAGGAACAGCGAGGTGATCGAAGCTTGGGAGATGGAAGTTGTAGGGCCACACAGATTCCCATACAAGGAGCTACACAAAGCCACAAAAGGATTCAAAGACAAGAACCTCATTGGGTTCGGAGGATTCGGTCGCGTCTACAAAGGGGTGCTCCCCAAGTCCAACATCGAAGTCGCGGTGAAGAGAGTCTCGAACGAATCAAAACAAGGCATGCAGGAGTTCGTGTCAGAAATCTCAACCATAGGAAGGCTACGTCACAGGAACCTCGTACAGTTGCTAGGTTGGTGTCGGAAACAAAACGACCTTTTACTGGTCTATGATTTCATGCGAAACGGAAGCTTAGACAAATACCTATTCGAGCAACCGAAAAGAATACTTAGTTGGGAGCAGAGATTTAAGATAATAAAAGGTGTGGCTTCGGGGTTGGTTTATTTGCACGAGGAGTGGGAGCAAACGGTAATTCACAGAGACGTCAAAGCGGGGAATGTTCTGTTAGATAACCAAATGAACGGAAGGTTGGGTGATTTTGGTTTGGCGAAGCTTTACGAGCACGGTTCGAACCCTAGCACGACACGTGTGGTGGGAACGTTGGGGTATCTTGCGCCGGAGCTCACACGAACCGGGAAGCCAACGACGAGCTCTGATGTTTATGCGTTCGGGGCTTTGGTGTTGGAGGTGCTGTGTGGGAGGAGGCCGATTGAGGTGAAGGCGCTGCCGGAGGAGCTTGTGCTGGTGGAGTGGGTGTGGGAGCGGTGGCGCGTGGGGAACGTGTTGGCGGTGGTGGACCCCAGGTTGGGTGGGGTGTTTGATGAGGAGGAGGCTTTGTTGGTGGTGAAGGTGGGGTTGTCGTGTTCTGCGGAGGCGCCGGAGGAGAGGCCGAGTATGAGGCAGGTGGTGAGGTACTTGGAGAGGGAGGTGGCGCCGCCGGAGGTGCTGGTGGAGGGGAAGAAAGAAGGTGGTGGAGATGGGGAGTTTAAGGGTTATGCGCATTCGTATTCGACGGCGTCGTTTTTTGACGTGGAGAGTGAATCTGCGTCATCTCTGTCACTTTCCGGTGGCCGGTAG 2118 0.4835 MLALDKLKQSMLHVNRVFLCSIIHLLCLMMVKTKTLSLVLHLCVMTIMVTNLAKSQQEEFFFNGFGGAASSNITLNGGAVIEHKGILRLTNDTQRVIGHAFYPTPIQFKHRNKNATKVFSFSTAFAFAIIPQHPKLGGHGFAFTISRSRSLEDAYPSQYLGLLNPNDVGNFSNHLFAVEFDTVQDFEFGDINGNHVGINLNNLASNKSVEAAFFTSTNNKQKLNLKSGEVTQAWVDYDSLKNNLEVRLSTTSSKPTSPILSYKVDLSQIIQDSMYVGFSSSTGLLSSSHYILGWSFKINGDAKTLSLKNLPSLSASSKPQKRLIFALSLSLIIPTVLAATALACYYFLLRKMRNSEVIEAWEMEVVGPHRFPYKELHKATKGFKDKNLIGFGGFGRVYKGVLPKSNIEVAVKRVSNESKQGMQEFVSEISTIGRLRHRNLVQLLGWCRKQNDLLLVYDFMRNGSLDKYLFEQPKRILSWEQRFKIIKGVASGLVYLHEEWEQTVIHRDVKAGNVLLDNQMNGRLGDFGLAKLYEHGSNPSTTRVVGTLGYLAPELTRTGKPTTSSDVYAFGALVLEVLCGRRPIEVKALPEELVLVEWVWERWRVGNVLAVVDPRLGGVFDEEEALLVVKVGLSCSAEAPEERPSMRQVVRYLEREVAPPEVLVEGKKEGGGDGEFKGYAHSYSTASFFDVESESASSLSLSGGR* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1298 705 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 313 IPR013320 -
Gso13g1298 705 CDD lectin_legume_LecRK_Arcelin_ConA 59 300 IPR001220 GO:0030246
Gso13g1298 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Gso13g1298 705 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE IV.2-LIKE PROTEIN 33 705 - -
Gso13g1298 705 Pfam Protein kinase domain 383 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1298 705 PANTHER - 33 705 - -
Gso13g1298 705 Pfam Legume lectin domain 58 310 IPR001220 GO:0030246
Gso13g1298 705 ProSitePatterns Protein kinases ATP-binding region signature. 389 412 IPR017441 GO:0005524
Gso13g1298 705 SMART serkin_6 383 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1298 705 CDD STKc_IRAK 389 655 - -
Gso13g1298 705 Gene3D Transferase(Phosphotransferase) domain 1 460 665 - -
Gso13g1298 705 SUPERFAMILY Protein kinase-like (PK-like) 367 660 IPR011009 -
Gso13g1298 705 Gene3D Phosphorylase Kinase; domain 1 368 459 - -
Gso13g1298 705 ProSiteProfiles Protein kinase domain profile. 383 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1298 705 Gene3D - 56 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1298 Gso-Chr13 28385672 28388098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1298 58 703 Receptor kinase-like Gene Family AT3G55550 58.108 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso13g1298 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1298 - - gmx:100787552 1316.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0320 18 2944511 2950069 Gso13g1298 13 28385672 28388098 GST