Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1293 ATGATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGCTGCAGCCGCTTCGTCCGTGTCTGGCCCCACCACACCGTCGTCTGTCCCGACTGCGACGGCGGCTTCATCGAAGAAATCGAACACCCGCCCCGCTCCGTCCACCTCGACCCCCGACGCCACCGCCATCGCTTCCCCGCTGCCGCCATGTACATGATCGGACAACGACCCTCCTCCGACCCCCGCCCCGCCTCATCCCTCCGCCGCACCCGCCGCAACGGCGGCGACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCGGCGCGGAGGACGAAAGTCGCGGCTTTGAACTCTTCTACGACGACGGCACCGGTTCCGGCCTCCGACCCCTGCCACCAAGCATGTCAGAGTTTCTTCTCGGATCTGGCTTCGATAGGCTTTTGGAACAACTCTCTCAGATTGAGATCAACGGTATTGGAAGGTACGAGCACCCTCCTGCTTCAAAAGCAGCCATTGATTCATTACCAACCATCGAAATCGATGACACCCATTTAGCCATGGAATCACACTGCGCGGTCTGCAAGGAAGCTTTTGAAACAAGCACTGCAGTTAGAGAAATGCCATGTAAGCACATATACCACCCTGAATGCATTTTACCATGGCTCGCACTTCACAACTCTTGCCCCGTTTGTCGCCACGAGTTACCCGCAGATACCCCAAATCCAAATCCAAATCCAAATTCGAATTCGAATTCGAATTCGAACCAAAATCCGTCACAAAATGTTGGCTTGAACGAGGAAGAGAATGTTGGGTTGACGATTTGGAGGCTGCCCGGTGGAGGGTTTGCTGTTGGGAGATTCTCCGGTGGAAGAAGTGGTGCTGATAGAGAGCTTCCTGTGGTTTACACTGAAATGGATGGTGGGTTTAACAATGGGGGGGGTGAGCCGAGGAGGATTTCTTGGTCTAGAGGGAATAGAGGGAGGGAGAGTGGAGGGTTGAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGAGGAAGTAGTAATACTAGTAGTAGTGGTGGTGCTAGTGCTACTCAGCGTTCTGCTTCTAGTAGAGAGTCTATGAGGGCGAGTTCCTCTCGTTCTAGTACTATGGATCTTTCGCCGCGGTCCCGCAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1188 0.5455 MMMSSGTSSYWCYRCSRFVRVWPHHTVVCPDCDGGFIEEIEHPPRSVHLDPRRHRHRFPAAAMYMIGQRPSSDPRPASSLRRTRRNGGDRSPFNPVIVLRGGAEDESRGFELFYDDGTGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFETSTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADTPNPNPNPNSNSNSNSNQNPSQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRSGADRELPVVYTEMDGGFNNGGGEPRRISWSRGNRGRESGGLNRFFRNLFGCFRGGSSNTSSSGGASATQRSASSRESMRASSSRSSTMDLSPRSRRTWSMDVNSGMRAW* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1293 395 MobiDBLite consensus disorder prediction 342 383 - -
Gso13g1293 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 4 338 - -
Gso13g1293 395 MobiDBLite consensus disorder prediction 238 257 - -
Gso13g1293 395 Pfam Protein of unknown function (DUF1117) 264 370 IPR010543 -
Gso13g1293 395 MobiDBLite consensus disorder prediction 300 322 - -
Gso13g1293 395 SMART ring_2 185 225 IPR001841 -
Gso13g1293 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 232 IPR013083 -
Gso13g1293 395 Pfam Ring finger domain 184 226 IPR001841 -
Gso13g1293 395 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Gso13g1293 395 CDD RING-H2_RNF126_like 185 226 - -
Gso13g1293 395 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Gso13g1293 395 MobiDBLite consensus disorder prediction 65 95 - -
Gso13g1293 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 338 - -
Gso13g1293 395 SUPERFAMILY RING/U-box 165 239 - -
Gso13g1293 395 MobiDBLite consensus disorder prediction 233 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1293 Gso-Chr13 28343849 28345814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1293 124 235 C3H Transcription Factor Family AT5G01980 40.179 1.82e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1293 - K11982 gmx:100784364 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0323 18 2977779 2979936 Gso13g1293 13 28343849 28345814 GST