Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1291 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAGGTGCAGGCCCAAGCTCATGCAGCTGCAGCCAGTGGCATTCTTGGCCACACAGAATTGAGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTACAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTAGATTCAGATAATGTTTCTACTGCACCCTCCATGACCGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAGTGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTGAGAAGCAAGATAATTCAACTGCTGTTGGGAGCATGAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTGATGTTGGTGACGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAACTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGTTGGAGTGACAATGGACATAATGATATCATAGCTGACATGGTTTGA 822 0.455 MSFVFRGTRADIENGFPGFIPERRALRVHATRPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQVQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQSGSSSMQQTSSSTPAEKQDNSTAVGSMKASDDELTCSVCLEQVDVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIIADMV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1291 273 MobiDBLite consensus disorder prediction 164 202 - -
Gso13g1291 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 258 IPR013083 -
Gso13g1291 273 SUPERFAMILY RING/U-box 207 256 - -
Gso13g1291 273 Pfam Ring finger domain 211 253 IPR001841 -
Gso13g1291 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 267 - -
Gso13g1291 273 MobiDBLite consensus disorder prediction 173 202 - -
Gso13g1291 273 PANTHER TARGET OF ERK KINASE MPK-1 1 267 - -
Gso13g1291 273 CDD RING-H2_PA-TM-RING 211 253 - -
Gso13g1291 273 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Gso13g1291 273 SMART ring_2 212 252 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1291 Gso-Chr13 28323668 28328593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1291 1 273 C3H Transcription Factor Family AT3G55530 76.727 5.71e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1291 K16283 - gmx:100816448 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0324 18 2989167 2993907 Gso13g1291 13 28323668 28328593 GST