Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1288 ATGGTAAGCTTCATAACTTTTACTTGTTTCTTGCACCTAACAAAGCCTTCAAACTTGAGGGAAGACACGTTGCTCCAAGGCCATCAACTTGGATCAACCAACCGTTTGATTTCTCCTTCAGGTTTATACACACTGCGTTTCTTTCAGCTTGATGATGGCTCTGACGCTAACAGCAAATTCTACCTTGGCGTATCAGCCAATAAATTCCACTACTACGTTTGGGTTGCCAACAGAGATAATCCAATCCACGATGACCCTGGAGTTCTCACTATTGATGAATTTTCCAACCTGAAAATTCTGTCTAGTACTACCACTATGATGCTATATTCAGTTGAAGCAGAAAATACTAACAAAAGTGTTCGTGCCACTTTGCTAGACACAGGAAACTTTGTGCTTCATGAGTTGAACCCAGATGGAATATCTGTGAAGAGGGTGTTATGGCAGAGTTTTGATTACCCCACAGACACAATTTTACCAGGGATGAAGCTTGGCTATGACAAGAACACTGGTCATACTTGGTCTATAACAGCAAGGAGAAGTTATAGAACTCTTTGGTCAGGGTCTTTCTCTCTCAGCCTTGATCCCAAAACTAACCAATTGGTTAGTAGGTGGAGAGAGGCAATCATATGGAGCAGTGGAGAATGGAGAAATGGAAGCTTTAGCAACTTGAACTCTTCATCACTTTACAAGGAGAACTTCAATTTCACTTTCTTTTCAAATGAAAGTGTGACTTACTTTGAATATGCTTCAGTTTCTGGTTATTTCACCATGGAGCCATTGGGTAGATTGAATGCTAGTGGTGCCGCTTACTCATGCGTTGATATTGAGATTGTCCCTGGTTGTACAATGCCACGGCCTCCCAAATGCAGGGAAGATGATGATTTGTACTTGCCCAATTGGAATAGCTTAGGAGCAATGTCAAGGAGAGGATTCATATTTGATGAAAGAGAGAACTTGACTATTTCTGATTGCTGGATGAAGTGCTTGAAAAATTGCTCATGTGTGGCCTACACTTATGCAAAGGAGGATGCAACTGGCTGCGAGATATGGAGCAGAGACGACACATCATATTTTGTTGAGACTAATTCCGGTGTTGGTCGTCCAATTTTCTTCTTTCAGACTGAAACCAAAGCTAAACACAAGAAGAGGAGAATATGGATCGCAGTTGCTACGGTTGGAGTTCTTCTCCTCATAATCTCATTCATGACATGCTTTATTATGTTGTGGAGAAAACAAAAAGAAAGAGTCGAAAAACGTAAGAAACGAGCAAGTCTCTTCTATGACACTGAAATTTCTGCTGCATACGATGAAGGAAGAGAACAATGGAATGAGAAGAGGACAGACTCCACCAAAAGAAATGTGTTAGAATGGAAGACAAGATACAGGATTATCCAAGGAGTTGCGCAAGGGCTTGTATATTTACATCAATATTCAAGATTAAAAGTGATACATAGAGACTTGAAAGCTAGCAACATTTTATTGGACAATGAGTTGAATCCAAAGATATCAGATTTTGGAATGGCTCGAATATTTAAATTGACACAATCTGAAGAAAAAACAAATAGGGTTGTTGGGACATATGGTTATATGTCTCCTGAGTACGCCATGAGTGGAGTCATCTCAACCAAAACTGATGTATATAGTTTTGGCGTCTTACTTCTTGAGATTGTAAGTGGAAAGAAAAACAATTGTGATGATTATCCACTCAATCTTATAGGATATGCATGGAAATTATGGAATCAAGGAGAAGCTCTAAAGCTAGTTGACACAATGTTGAATGGATCATGCCCCCACATCCAAGTAATACGATGCATTCATATAGGTCTCTTATGCACTCAAGACCAAGCAAAGGACAGACCCACTATGCTTGATGTCATTTCTTTTCTTTCAAATGAAAATACCCAATTACCTCCACCTATACAACCATCACTTTATACCATCAATGGAGTGAAGGAGGCAAAGCAGCATAAAAGTTGTTCTATCAATGAGATAACAAATTCAATGACATCGGGTAGATAA 2019 0.3947 MVSFITFTCFLHLTKPSNLREDTLLQGHQLGSTNRLISPSGLYTLRFFQLDDGSDANSKFYLGVSANKFHYYVWVANRDNPIHDDPGVLTIDEFSNLKILSSTTTMMLYSVEAENTNKSVRATLLDTGNFVLHELNPDGISVKRVLWQSFDYPTDTILPGMKLGYDKNTGHTWSITARRSYRTLWSGSFSLSLDPKTNQLVSRWREAIIWSSGEWRNGSFSNLNSSSLYKENFNFTFFSNESVTYFEYASVSGYFTMEPLGRLNASGAAYSCVDIEIVPGCTMPRPPKCREDDDLYLPNWNSLGAMSRRGFIFDERENLTISDCWMKCLKNCSCVAYTYAKEDATGCEIWSRDDTSYFVETNSGVGRPIFFFQTETKAKHKKRRIWIAVATVGVLLLIISFMTCFIMLWRKQKERVEKRKKRASLFYDTEISAAYDEGREQWNEKRTDSTKRNVLEWKTRYRIIQGVAQGLVYLHQYSRLKVIHRDLKASNILLDNELNPKISDFGMARIFKLTQSEEKTNRVVGTYGYMSPEYAMSGVISTKTDVYSFGVLLLEIVSGKKNNCDDYPLNLIGYAWKLWNQGEALKLVDTMLNGSCPHIQVIRCIHIGLLCTQDQAKDRPTMLDVISFLSNENTQLPPPIQPSLYTINGVKEAKQHKSCSINEITNSMTSGR* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1288 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 379 - -
Gso13g1288 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 451 649 - -
Gso13g1288 672 Pfam PAN-like domain 317 353 IPR003609 -
Gso13g1288 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Gso13g1288 672 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 451 649 - -
Gso13g1288 672 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 70 379 - -
Gso13g1288 672 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 175 IPR036426 -
Gso13g1288 672 CDD B_lectin 30 153 IPR001480 -
Gso13g1288 672 Gene3D Transferase(Phosphotransferase) domain 1 442 637 - -
Gso13g1288 672 ProSiteProfiles PAN/Apple domain profile. 289 374 IPR003609 -
Gso13g1288 672 Gene3D - 17 150 IPR036426 -
Gso13g1288 672 SMART blect_4 21 153 IPR001480 -
Gso13g1288 672 Pfam Protein tyrosine and serine/threonine kinase 451 629 IPR001245 GO:0004672|GO:0006468
Gso13g1288 672 ProSiteProfiles Protein kinase domain profile. 297 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1288 672 Pfam D-mannose binding lectin 72 179 IPR001480 -
Gso13g1288 672 ProSiteProfiles Bulb-type lectin domain profile. 21 145 IPR001480 -
Gso13g1288 672 SMART serkin_6 386 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1288 672 SUPERFAMILY Protein kinase-like (PK-like) 450 647 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1288 Gso-Chr13 28239129 28242844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1288 448 645 Receptor kinase-like Gene Family AT4G23150 55.224 8.81e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso13g1288 PK_Tyr_Ser-Thr 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1288 - - gsj:114381755 1354.73