Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1284 ATGGCCATGCTCAATATCATCGCCATTGTCTCCCTCTTACTCTTAATCATTCCATCCCAAGCCAAAATTCCCGGCGTCTATTCCGGTGGGCCATGGCAAAGCGCTCACGCCACTTTCTACGGTGGCAGCGACGCCTCAGGAACTATGGGAGGGGCGTGTGGGTACGGGAACCTATATTCCCAAGGCTACGGCGTGAACACTGCGGCACTAAGCACTGCTCTATTCAACAATGGTTTCAGCTGTGGAGCGTGCTTCGAAATCAAATGCACCGATGACCCGAAATGGTGTCATCCAGGTAACCCTTCCATCTTTGTCACCGCCACAAACTTCTGCCCTCCAAACTACGCTCTCCCCAGCGACAATGGCGGTTGGTGCAACCCTCCCAGACCTCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCTCAGTACCGCGCCGGCATCGTCCCCGTCTCATATCGCCGGGTGCCTTGCAGGAAAGAGGGAGGGATGAGGTTCACGATCAACGGGTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCATGAGGGCCAGCGTGAAAGGGTCCAAAACGGAGTGGATGAGCATGAGCCGCAACTGGGGGCAGAACTGGCAATCAAACGCAGTTCTGGTTGGTCAGTCACTCTCCTTCAGGGTCACAGGCGGTGACCGACGCACATCCACCTCATGGAACATTGTCCCACGTAATTGGCAATTTGGCCAAACCTTCGCTGGAAAGAATTTTAGAATCTAG 777 0.5431 MAMLNIIAIVSLLLLIIPSQAKIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPKWCHPGNPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKEGGMRFTINGFRYFNLVLITNVAGAGDIMRASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTGGDRRTSTSWNIVPRNWQFGQTFAGKNFRI* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1284 258 Gene3D - 165 256 IPR036749 -
Gso13g1284 258 PANTHER EXPANSIN-A4 6 257 - -
Gso13g1284 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Gso13g1284 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Gso13g1284 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Gso13g1284 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Gso13g1284 258 PANTHER EXPANSIN-A15 6 257 IPR002963 GO:0009664
Gso13g1284 258 SMART dpbb_1 67 154 IPR007112 -
Gso13g1284 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Gso13g1284 258 Gene3D - 19 160 IPR036908 -
Gso13g1284 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Gso13g1284 258 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Gso13g1284 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Gso13g1284 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Gso13g1284 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Gso13g1284 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Gso13g1284 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Gso13g1284 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Gso13g1284 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1284 Gso-Chr13 28170444 28172697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1284 4 258 Expansin Gene Family AT2G39700 81.569 5.44e-162 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1284 - - gmx:100812894 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0331 18 3130452 3132480 Gso13g1284 13 28170444 28172697 GST
Gso13g1284 13 28170444 28172697 Gso14g0583 14 5691233 5693727 PCT
Gso13g1284 13 28170444 28172697 Gso2g2117 2 45754527 45756866 PCT
Gso14g0583 14 5691233 5693727 Gso13g1284 13 28170444 28172697 PCT
Gso2g2117 2 45754527 45756866 Gso13g1284 13 28170444 28172697 PCT