Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1281 ATGGGTTGCTTCTTTAGTGTACCTTCAAAGATCAAAGCTGAGAGCCCTCCACGTAATGGTTTGAATTCAAAGGATGGTAGCAAAGAAGAGAATGATTTGAGCGGTTTAAGCAGCAAGGTGTCCTCTTCAGCTATGCTTCTAACACCTCAGAGTGAGGATGAGATATTGCAGGCCAGCAATTTGAAGAACTTCACATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCGGATAGTATGGTGGGTGAAGGCGGGTTTGGTTCTGTGTTTAAGGGGTGGATTGATGAGCACACACTTGCCCCTACTAAACCAGGGACAGGAATGGTCATTGCAGTGAAGAGACTTAACCAAGAAAGCAACCAGGGACACATTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAACTAATTGGTTACTCCTTAGAGGATGATCACCGGATTTTGGTGTATGAATTTGTGGCCAAGGGTAGTTTGGATAATCACTTGTTCAGGAGGGGTTCTTACTTTCAACCACTCTCTTGGAACATCCGTATGAAGGTTGCTCTAGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATATAGAGACTTCAAAACTTCTAATATCTTACTGGATTCTAATTATAATGCAAAACTCTCGGATTTTGGGTTGGCAAAAAATGGACCAGAAGGTGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACCTATGGCTATGCAGCTCCTGAGTATATAGCCACAGGTCACCTAACCAAAAAGAGTGACATATACAGTTTTGGAGTTGTTCTTCTGGAACTCATGTCAGCGAAACGTGCACTGGACAACAACAGGCCAAGCGGGGAGCACAGTTTAGTTGAATGGGCCAAACCACTCCTCACCAACAAACACAAGATCTCCCAAGTTATGGATGCTCGCATAGAAGGCCAATACTCAAAGCGCGAAGCAAAGAGAATAGCTCACCTTGCAATTCAATGCCTATCTACAGAACAAAAACTTAGACCAAACATATATGAGGTGGTGAGATCATTGGAAAATCTTCACGATTCCAAAGACACAAGCTCAAGCAGCAGCGGTACTCCTAATCCAAGTTTATCTCCTTCTCCTCTTCATACATAG 1161 0.4332 MGCFFSVPSKIKAESPPRNGLNSKDGSKEENDLSGLSSKVSSSAMLLTPQSEDEILQASNLKNFTFNELRTATRNFRPDSMVGEGGFGSVFKGWIDEHTLAPTKPGTGMVIAVKRLNQESNQGHIEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTYGYAAPEYIATGHLTKKSDIYSFGVVLLELMSAKRALDNNRPSGEHSLVEWAKPLLTNKHKISQVMDARIEGQYSKREAKRIAHLAIQCLSTEQKLRPNIYEVVRSLENLHDSKDTSSSSSGTPNPSLSPSPLHT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1281 386 MobiDBLite consensus disorder prediction 362 386 - -
Gso13g1281 386 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1281 386 Gene3D Transferase(Phosphotransferase) domain 1 162 376 - -
Gso13g1281 386 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Gso13g1281 386 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Gso13g1281 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gso13g1281 386 SUPERFAMILY Protein kinase-like (PK-like) 53 358 IPR011009 -
Gso13g1281 386 PANTHER OS01G0588500 PROTEIN-RELATED 26 372 - -
Gso13g1281 386 PANTHER KINASE 1B 26 372 - -
Gso13g1281 386 MobiDBLite consensus disorder prediction 1 36 - -
Gso13g1281 386 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Gso13g1281 386 MobiDBLite consensus disorder prediction 364 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1281 Gso-Chr13 28122558 28126479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1281 62 383 Glycoside Hydrolase AT3G07070 46.605 3.83e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso13g1281 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1281 - - gmx:106795104 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0336 18 3180851 3185026 Gso13g1281 13 28122558 28126479 GST
Gso13g1281 13 28122558 28126479 Gso14g0590 14 5747704 5752150 PCT
Gso13g1281 13 28122558 28126479 Gso2g2109 2 45693949 45699204 PCT
Gso14g0590 14 5747704 5752150 Gso13g1281 13 28122558 28126479 PCT
Gso2g2109 2 45693949 45699204 Gso13g1281 13 28122558 28126479 PCT