Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1273 ATGGAGAGTCCCCATTCACTCTCTCCCTCTTCCTCCTCATCCTCCTCCTCTTACTCCTCCGACGGCGTCGCCGGCTTCGAGACGGAGGAACCGCGGACGCCGCTGGCTGTGCGCCGCGCGCTGCAGCTCCTCAACTCCGGCCAGCCCGACCTGCGCCTCCAAGCCGCTCGCGACATCCGGCGCCTCACGAAGACGTCACAACGTTGTCGGCGCCAGTTATCCGAGGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAATAAAATCAATATTGTGGAGGCCGGTGCATTAGAACCGATAATTAGTTTCCTCAAGTCTCAAAATCTAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATCATTAGTGCTTGTGGTGCCATTCCTCTTCTTGTGAAGATCCTTAGAGATGGAAGCCCCCAAGCTAAAGCTGAGGCAGTAATGGCTCTCTCTAATTTATCAACACACCCTAACAATCTCAGGATCATTCTTAAGACAAACCCAATCCCTTTCATAGTTGATCTTCTCAAAACCTGTAAAAAATCCTCGAAAACTGCTGAGAAATGCTGTGCTTTGATAGAATCTTTGGTGGATTATGATGAGGGCAGGACTGCCTTGACATCCGAGGAAGGCGGGGTTCTTGCAGTCGTGGAAGTTCTCGAAATTGGCACTCTCCAAAGCAGGGAGCATGCTGTTGGAGCACTGCTGACAATGTGCCAAAGCGACCGATGTAAATACCGGGAACCAATTCTTAGAGAAGGTGTCATTCCAGGACTTCTTGAGCTTACTGTCCAAGGAACACCAAAGTCTCAGTCCAAAGCACGCAGCCTTCTGCAGTTACTGAGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGATACCCTTGAGAATATAGTATGCAGCATCATATCACAGATCGATGGCGATGATCAATCTGGTAAGGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCTCTTGTATGCACCCCAAGTGATCTTCCTATAGCTGACTGTGCTGCTTCTGAAGTTTCTTCAAAATGA 1179 0.4996 MESPHSLSPSSSSSSSSYSSDGVAGFETEEPRTPLAVRRALQLLNSGQPDLRLQAARDIRRLTKTSQRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNLNLQESATASLLTLSASSTNKPIISACGAIPLLVKILRDGSPQAKAEAVMALSNLSTHPNNLRIILKTNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLEIGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARSLLQLLRESPYPRSEIQPDTLENIVCSIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIADCAASEVSSK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1273 392 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 159 IPR000225 GO:0005515
Gso13g1273 392 SUPERFAMILY ARM repeat 39 335 IPR016024 -
Gso13g1273 392 MobiDBLite consensus disorder prediction 1 31 - -
Gso13g1273 392 Pfam Armadillo/beta-catenin-like repeat 150 186 IPR000225 GO:0005515
Gso13g1273 392 Pfam Armadillo/beta-catenin-like repeat 107 144 IPR000225 GO:0005515
Gso13g1273 392 PANTHER U BOX DOMAIN-CONTAINING 15 374 - -
Gso13g1273 392 MobiDBLite consensus disorder prediction 1 23 - -
Gso13g1273 392 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 374 - -
Gso13g1273 392 SMART arm_5 188 230 IPR000225 GO:0005515
Gso13g1273 392 SMART arm_5 232 272 IPR000225 GO:0005515
Gso13g1273 392 SMART arm_5 147 187 IPR000225 GO:0005515
Gso13g1273 392 SMART arm_5 65 104 IPR000225 GO:0005515
Gso13g1273 392 SMART arm_5 106 146 IPR000225 GO:0005515
Gso13g1273 392 Gene3D - 26 374 IPR011989 -
Gso13g1273 392 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1273 Gso-Chr13 28017931 28022205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1273 37 314 U-box Gene Family AT2G23140 33.929 3.89e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1273 - - gmx:100809684 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0344 18 3239599 3243738 Gso13g1273 13 28017931 28022205 GST
Gso13g1273 13 28017931 28022205 Gso14g0596 14 5821907 5826199 PCT
Gso13g1273 13 28017931 28022205 Gso2g2101 2 45628192 45632320 PCT
Gso14g0596 14 5821907 5826199 Gso13g1273 13 28017931 28022205 PCT
Gso2g2101 2 45628192 45632320 Gso13g1273 13 28017931 28022205 PCT