Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1271 ATGGCACTGGCCAAAGACCAAAGAATTCCACGTGATTCAAGCATGAGCAGCAAGGTTCAAAACTGTGTTTTCAGTGAGACTAGCGTGGAGGTTACCTCCATGACTGTTCATAGGGTCAATGAGTACCACAAATCTGTGTTAGAAGATCAGGAAGATGGCTCACCAACTACTAATGGTCTCAGCAATGATTCAGCTATAACGCATTCTCCTCCTCTATGTGGCAGTGTCAAAGGGTATGCTTATAAGGGCACAAACTATCAGCTTGAAGAAGCAGAACCTCTGATTAATTTCAAAGGGTATAGCAATCTCATGCAAGGTGGTGGATCTTTGCTTAGCTTTCAGCAGAACAAGATGGTCCCTAACAACTGTTACATGAAAGAAAATGGTCAGAAAGAGGTTTGTGTTTGGGAGAATAATTTGCATCAAGGCCGTGACCATTGGAATCAAACTAGTCCAAGAAACACTAGAGACATGCGCCTGGTAGAGAATGTCAATTGCTTTCAAACTTCTAGTGGCTTTATCTCCATAGTTAATAATGCCAAAGAGAAACAACATGGCCAAAGTTCATCAGGGTTGCTCTACCCAGCACCAACTATTCCTAATGCTAGTAGCCTCCACAAGTTAGGAGCACAAGAATCAGTTTTGCAAAAGCGCCCTTTTATGGGGGAGAGCATGAAAGCTGCCAAGAAGCAATGCTCAATTGAGAGCAAAACGACCAAACATAATTCAAGCCCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAAGAACTGGTGCCTAATGGCTCCAAGGTTGATTTGGTTACTATGCTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAACTGCAAGTGAAGGTTTTGGCAACCGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAAGAAGTCATCGATACCATTCTTTCATCACAAAAAGAGAGAAGTTCAAGCTCAAAGTAG 1020 0.4245 MALAKDQRIPRDSSMSSKVQNCVFSETSVEVTSMTVHRVNEYHKSVLEDQEDGSPTTNGLSNDSAITHSPPLCGSVKGYAYKGTNYQLEEAEPLINFKGYSNLMQGGGSLLSFQQNKMVPNNCYMKENGQKEVCVWENNLHQGRDHWNQTSPRNTRDMRLVENVNCFQTSSGFISIVNNAKEKQHGQSSSGLLYPAPTIPNASSLHKLGAQESVLQKRPFMGESMKAAKKQCSIESKTTKHNSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEVIDTILSSQKERSSSSK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1271 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Gso13g1271 339 Gene3D - 239 302 IPR036638 GO:0046983
Gso13g1271 339 MobiDBLite consensus disorder prediction 226 258 - -
Gso13g1271 339 MobiDBLite consensus disorder prediction 51 66 - -
Gso13g1271 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 329 - -
Gso13g1271 339 MobiDBLite consensus disorder prediction 46 66 - -
Gso13g1271 339 SMART finulus 251 300 IPR011598 GO:0046983
Gso13g1271 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 329 - -
Gso13g1271 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 304 IPR036638 GO:0046983
Gso13g1271 339 MobiDBLite consensus disorder prediction 237 251 - -
Gso13g1271 339 CDD bHLH_AtIND_like 246 308 - -
Gso13g1271 339 Pfam Helix-loop-helix DNA-binding domain 255 295 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1271 Gso-Chr13 28001402 28003392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1271 135 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 50.971 1.08e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g1271 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1271 - - gmx:100777047 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0345 18 3263014 3264820 Gso13g1271 13 28001402 28003392 GST
Gso13g1271 13 28001402 28003392 Gso14g0597 14 5837411 5839252 PCT
Gso13g1271 13 28001402 28003392 Gso2g2100 2 45611759 45613603 PCT
Gso14g0597 14 5837411 5839252 Gso13g1271 13 28001402 28003392 PCT
Gso2g2100 2 45611759 45613603 Gso13g1271 13 28001402 28003392 PCT